miRNA display CGI


Results 61 - 80 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26683 5' -52.6 NC_005808.1 + 15590 0.67 0.771451
Target:  5'- cGCUGCGGAu------GCACCG-CGCCa -3'
miRNA:   3'- -CGACGCUUuagcuguUGUGGCcGCGG- -5'
26683 5' -52.6 NC_005808.1 + 18832 0.67 0.771451
Target:  5'- aGCcGCGGcgcAUCGGCc-CGgUGGCGCCg -3'
miRNA:   3'- -CGaCGCUu--UAGCUGuuGUgGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 34665 0.67 0.771451
Target:  5'- gGCcgugGCGuGAagGugGACGCCGaGCGCa -3'
miRNA:   3'- -CGa---CGCuUUagCugUUGUGGC-CGCGg -5'
26683 5' -52.6 NC_005808.1 + 14825 0.67 0.770412
Target:  5'- cGCUGCcuucgcccAGGUCGAugccguuggcggcCAGCGCCgcacgcugGGCGCCu -3'
miRNA:   3'- -CGACGc-------UUUAGCU-------------GUUGUGG--------CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 2417 0.67 0.765194
Target:  5'- --aGCGuAGGUguaCGGCAGCAggccggccucgaagaUCGGCGCCa -3'
miRNA:   3'- cgaCGC-UUUA---GCUGUUGU---------------GGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 25305 0.67 0.760993
Target:  5'- -gUGCGGc--CGGCccugcCACCGGCGCUc -3'
miRNA:   3'- cgACGCUuuaGCUGuu---GUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 6364 0.67 0.760993
Target:  5'- --gGCGAAccggcccacGUCGGCAAUcaggcgcagGCCGGCcgGCCc -3'
miRNA:   3'- cgaCGCUU---------UAGCUGUUG---------UGGCCG--CGG- -5'
26683 5' -52.6 NC_005808.1 + 13179 0.67 0.760993
Target:  5'- -gUGCGAGcgCGugGGCAac-GCGCCc -3'
miRNA:   3'- cgACGCUUuaGCugUUGUggcCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 5355 0.67 0.760993
Target:  5'- cGCUGCGuggcCGcCuGCACC-GCGCCc -3'
miRNA:   3'- -CGACGCuuuaGCuGuUGUGGcCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 30459 0.67 0.760993
Target:  5'- --cGCGGAAgCG-CAGCGCgUGGCGCg -3'
miRNA:   3'- cgaCGCUUUaGCuGUUGUG-GCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 39135 0.67 0.760993
Target:  5'- cGCccGCGAAcAUCGG-GGCGCgCGGCGUCu -3'
miRNA:   3'- -CGa-CGCUU-UAGCUgUUGUG-GCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 4289 0.67 0.759939
Target:  5'- gGCUGUacuGGUUGACGcccauguaggacaGCuuGCCGGCGUCa -3'
miRNA:   3'- -CGACGcu-UUAGCUGU-------------UG--UGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 26072 0.67 0.757827
Target:  5'- cGCUcgGCGAAcUCGGggcgggccucaaucCAgugguACACCGuGCGCCa -3'
miRNA:   3'- -CGA--CGCUUuAGCU--------------GU-----UGUGGC-CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 10286 0.67 0.750394
Target:  5'- cCUGU-AGGUCGucCAGCACCucggGGUGCCa -3'
miRNA:   3'- cGACGcUUUAGCu-GUUGUGG----CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 731 0.67 0.750394
Target:  5'- --gGCGGcuuugcCGACAACGCCGGCcagGUCu -3'
miRNA:   3'- cgaCGCUuua---GCUGUUGUGGCCG---CGG- -5'
26683 5' -52.6 NC_005808.1 + 21693 0.67 0.750394
Target:  5'- gGCUG-GgcAUCGACAcguUGCCGGCaGUCg -3'
miRNA:   3'- -CGACgCuuUAGCUGUu--GUGGCCG-CGG- -5'
26683 5' -52.6 NC_005808.1 + 22526 0.67 0.750394
Target:  5'- cGCaGCGAGcaCGcGCAGCGCgCGcGUGCCg -3'
miRNA:   3'- -CGaCGCUUuaGC-UGUUGUG-GC-CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 28762 0.67 0.750394
Target:  5'- cGgUGCGcuucUCGGC-GCGCaCGGCGUCg -3'
miRNA:   3'- -CgACGCuuu-AGCUGuUGUG-GCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 13881 0.67 0.750394
Target:  5'- -aUGCGA--UCGACAGCcgaauugaUGGCGUCg -3'
miRNA:   3'- cgACGCUuuAGCUGUUGug------GCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 16964 0.67 0.750394
Target:  5'- aCUGcCGAGGUgGACGcGCuGCUGGCGaCCg -3'
miRNA:   3'- cGAC-GCUUUAgCUGU-UG-UGGCCGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.