miRNA display CGI


Results 41 - 60 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26683 5' -52.6 NC_005808.1 + 1463 0.66 0.7919
Target:  5'- --gGCGcgGUCGGCGGCcucCUGGCagGCCg -3'
miRNA:   3'- cgaCGCuuUAGCUGUUGu--GGCCG--CGG- -5'
26683 5' -52.6 NC_005808.1 + 381 0.66 0.7919
Target:  5'- ---aCGAAAUaGACGAUGCCcagGGCGCCc -3'
miRNA:   3'- cgacGCUUUAgCUGUUGUGG---CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 10684 0.66 0.7919
Target:  5'- aGUUGCGucuuGA-CGGCAGCGCgcaCGGCcucgGCCg -3'
miRNA:   3'- -CGACGCu---UUaGCUGUUGUG---GCCG----CGG- -5'
26683 5' -52.6 NC_005808.1 + 3687 0.66 0.7919
Target:  5'- -gUGCGAAuccaccaCGGCGACGCgcugccccaugCGGCGCa -3'
miRNA:   3'- cgACGCUUua-----GCUGUUGUG-----------GCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 34839 0.66 0.790893
Target:  5'- gGC-GCGAGccuggauuccuucGUCGccaACAGCaaGCCGGcCGCCg -3'
miRNA:   3'- -CGaCGCUU-------------UAGC---UGUUG--UGGCC-GCGG- -5'
26683 5' -52.6 NC_005808.1 + 26106 0.66 0.781758
Target:  5'- cGCUGgUGGA--CGACAAUAUC-GCGCCc -3'
miRNA:   3'- -CGAC-GCUUuaGCUGUUGUGGcCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 25297 0.66 0.781758
Target:  5'- -aUGcCGGAAUgGAUGcGCGCCcgcGGCGCCg -3'
miRNA:   3'- cgAC-GCUUUAgCUGU-UGUGG---CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 27013 0.66 0.781758
Target:  5'- gGC-GCGGugcAUCcGCAGCGCgucgucacugaCGGCGCCa -3'
miRNA:   3'- -CGaCGCUu--UAGcUGUUGUG-----------GCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 41832 0.66 0.781758
Target:  5'- cGCUGCGGAggacaucuaaAUgGACuggaaaGACcugGCCGGCGUUg -3'
miRNA:   3'- -CGACGCUU----------UAgCUG------UUG---UGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 27954 0.66 0.781758
Target:  5'- aGgUGCaaGGuaucAAUCuGC-GCACCGGCGCCg -3'
miRNA:   3'- -CgACG--CU----UUAGcUGuUGUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 27492 0.66 0.781758
Target:  5'- --cGCGAGGaugcCGGCGGCcUCGGcCGCCa -3'
miRNA:   3'- cgaCGCUUUa---GCUGUUGuGGCC-GCGG- -5'
26683 5' -52.6 NC_005808.1 + 32360 0.66 0.781758
Target:  5'- cGCUGCGG--UCGcCGccgagGCcCCGGcCGCCc -3'
miRNA:   3'- -CGACGCUuuAGCuGU-----UGuGGCC-GCGG- -5'
26683 5' -52.6 NC_005808.1 + 32642 0.66 0.781758
Target:  5'- cGCUGUccuGUCGAagu--UCGGCGCCg -3'
miRNA:   3'- -CGACGcuuUAGCUguuguGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 475 0.66 0.780734
Target:  5'- cGCUGUcgcggucGGAugccUCGGCAGCAUacuGCGCCg -3'
miRNA:   3'- -CGACG-------CUUu---AGCUGUUGUGgc-CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 14160 0.66 0.778682
Target:  5'- -gUGCcgGAAAUCGACGgcugguucACcuggacaggcaucuACUGGCGCCg -3'
miRNA:   3'- cgACG--CUUUAGCUGU--------UG--------------UGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 4910 0.67 0.775593
Target:  5'- uGUU-CGAcaGGUCGGCGACgACCagcuucuugcccucgGGCGCCa -3'
miRNA:   3'- -CGAcGCU--UUAGCUGUUG-UGG---------------CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 15590 0.67 0.771451
Target:  5'- cGCUGCGGAu------GCACCG-CGCCa -3'
miRNA:   3'- -CGACGCUUuagcuguUGUGGCcGCGG- -5'
26683 5' -52.6 NC_005808.1 + 25639 0.67 0.771451
Target:  5'- aGC-GCGuccaccUCGGCGAguucUGCCGGCGUCa -3'
miRNA:   3'- -CGaCGCuuu---AGCUGUU----GUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 5560 0.67 0.771451
Target:  5'- cGCcaCGguAUCGACGGCGCCaacgcuGGcCGCCa -3'
miRNA:   3'- -CGacGCuuUAGCUGUUGUGG------CC-GCGG- -5'
26683 5' -52.6 NC_005808.1 + 34665 0.67 0.771451
Target:  5'- gGCcgugGCGuGAagGugGACGCCGaGCGCa -3'
miRNA:   3'- -CGa---CGCuUUagCugUUGUGGC-CGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.