miRNA display CGI


Results 41 - 60 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26683 5' -52.6 NC_005808.1 + 8633 0.69 0.650772
Target:  5'- cGCUGCGGuggCGAgGuCGCCGGC-CUu -3'
miRNA:   3'- -CGACGCUuuaGCUgUuGUGGCCGcGG- -5'
26683 5' -52.6 NC_005808.1 + 8663 0.66 0.7919
Target:  5'- --cGCGcgGUCGGCAuuGCguGCCGcGCGCa -3'
miRNA:   3'- cgaCGCuuUAGCUGU--UG--UGGC-CGCGg -5'
26683 5' -52.6 NC_005808.1 + 8667 0.69 0.605504
Target:  5'- cGCUGUGugcagCGGCugcuGCGCCGcccagguguGCGCCg -3'
miRNA:   3'- -CGACGCuuua-GCUGu---UGUGGC---------CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 8767 0.66 0.821221
Target:  5'- -gUGCcgcuUCgGGCAGCACgCGGCGCa -3'
miRNA:   3'- cgACGcuuuAG-CUGUUGUG-GCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 9293 0.7 0.560617
Target:  5'- gGCUGCGcauuGAcuuccUCGGCGAC-CUGGCGgCg -3'
miRNA:   3'- -CGACGCu---UU-----AGCUGUUGuGGCCGCgG- -5'
26683 5' -52.6 NC_005808.1 + 9532 0.66 0.821221
Target:  5'- cGCUGCGcgacccgauGAAgcgcaCGACAGCACgCGGgaacuugcacuUGCCg -3'
miRNA:   3'- -CGACGC---------UUUa----GCUGUUGUG-GCC-----------GCGG- -5'
26683 5' -52.6 NC_005808.1 + 9727 0.72 0.484679
Target:  5'- --aGuCGGGcgCGACAAUcUCGGCGCCg -3'
miRNA:   3'- cgaC-GCUUuaGCUGUUGuGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 9839 0.75 0.30884
Target:  5'- cGCUGCaccucGGuuUCGGCGucgaugagcgugGCACCGGCGCg -3'
miRNA:   3'- -CGACG-----CUuuAGCUGU------------UGUGGCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 9906 0.68 0.69128
Target:  5'- cGCgGCGAGcacGUCGGCGAacugcucgggcuuCACgucgggcagcuucgCGGCGCCg -3'
miRNA:   3'- -CGaCGCUU---UAGCUGUU-------------GUG--------------GCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 9991 0.74 0.341497
Target:  5'- aGCgugGCGggGUCGAaagUGCCGcGCGCCc -3'
miRNA:   3'- -CGa--CGCuuUAGCUguuGUGGC-CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 10043 0.67 0.739669
Target:  5'- --cGuCGGAG-CGGCAuCGCCGGCGgCa -3'
miRNA:   3'- cgaC-GCUUUaGCUGUuGUGGCCGCgG- -5'
26683 5' -52.6 NC_005808.1 + 10286 0.67 0.750394
Target:  5'- cCUGU-AGGUCGucCAGCACCucggGGUGCCa -3'
miRNA:   3'- cGACGcUUUAGCu-GUUGUGG----CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 10298 0.66 0.811643
Target:  5'- gGCgGCGAugaGGUCGcGCAacGCGCUGGUGUUu -3'
miRNA:   3'- -CGaCGCU---UUAGC-UGU--UGUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 10472 0.78 0.219296
Target:  5'- cCUG-GAAGUCGcGCAGCACCGGC-CCg -3'
miRNA:   3'- cGACgCUUUAGC-UGUUGUGGCCGcGG- -5'
26683 5' -52.6 NC_005808.1 + 10480 0.69 0.66207
Target:  5'- gGC-GuCGAGGUCGGCAGCGgCCagGGCGUUg -3'
miRNA:   3'- -CGaC-GCUUUAGCUGUUGU-GG--CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 10595 0.67 0.739669
Target:  5'- aGCgUGuCGAGGguuUCGcACAggACGCUGGCGUCg -3'
miRNA:   3'- -CG-AC-GCUUU---AGC-UGU--UGUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 10684 0.66 0.7919
Target:  5'- aGUUGCGucuuGA-CGGCAGCGCgcaCGGCcucgGCCg -3'
miRNA:   3'- -CGACGCu---UUaGCUGUUGUG---GCCG----CGG- -5'
26683 5' -52.6 NC_005808.1 + 10865 0.68 0.684568
Target:  5'- cCUGCGuggcuucGGUCGGCGcgauGCGCgCGGCGUa -3'
miRNA:   3'- cGACGCu------UUAGCUGU----UGUG-GCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 10956 0.67 0.739669
Target:  5'- cGCgGCGAcagcCGGgGACACUGG-GCCa -3'
miRNA:   3'- -CGaCGCUuua-GCUgUUGUGGCCgCGG- -5'
26683 5' -52.6 NC_005808.1 + 11421 0.7 0.57177
Target:  5'- aGCgGCGAGccggcgugcagGUCGccgauaaggcGCGACACCGGCaGCUu -3'
miRNA:   3'- -CGaCGCUU-----------UAGC----------UGUUGUGGCCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.