Results 41 - 60 of 214 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26683 | 5' | -52.6 | NC_005808.1 | + | 9839 | 0.75 | 0.30884 |
Target: 5'- cGCUGCaccucGGuuUCGGCGucgaugagcgugGCACCGGCGCg -3' miRNA: 3'- -CGACG-----CUuuAGCUGU------------UGUGGCCGCGg -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 36181 | 0.75 | 0.301057 |
Target: 5'- cGCgaGCGAGGacgaguUCGACGACAUCaccgagGGCGCCg -3' miRNA: 3'- -CGa-CGCUUU------AGCUGUUGUGG------CCGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 32007 | 0.76 | 0.293426 |
Target: 5'- -gUGCGAAAcccUCGAC-ACGCUGGaCGCCc -3' miRNA: 3'- cgACGCUUU---AGCUGuUGUGGCC-GCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 25721 | 0.78 | 0.219296 |
Target: 5'- cGCgGCGggGUCGuCGuccuCACCGGCGgCa -3' miRNA: 3'- -CGaCGCuuUAGCuGUu---GUGGCCGCgG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 10472 | 0.78 | 0.219296 |
Target: 5'- cCUG-GAAGUCGcGCAGCACCGGC-CCg -3' miRNA: 3'- cGACgCUUUAGC-UGUUGUGGCCGcGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 35340 | 0.73 | 0.433562 |
Target: 5'- aGCUGCacaAGGcCGGCGACAUCGGCccgcGCCa -3' miRNA: 3'- -CGACGc--UUUaGCUGUUGUGGCCG----CGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 24399 | 0.72 | 0.46387 |
Target: 5'- cGCUGCGcAAGUUGAagaAGCgcaGCCGGC-CCg -3' miRNA: 3'- -CGACGC-UUUAGCUg--UUG---UGGCCGcGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 24479 | 0.7 | 0.546211 |
Target: 5'- uGCUGCuuggccugcgccagGAAGUCGuaGGgGCUGGCGCCc -3' miRNA: 3'- -CGACG--------------CUUUAGCugUUgUGGCCGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 34577 | 0.71 | 0.538503 |
Target: 5'- gGCUGUcac--CGGCGAaGCUGGCGCCa -3' miRNA: 3'- -CGACGcuuuaGCUGUUgUGGCCGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 25143 | 0.71 | 0.527557 |
Target: 5'- --gGCGAAgaaGUCGAUAACccACCGGC-CCu -3' miRNA: 3'- cgaCGCUU---UAGCUGUUG--UGGCCGcGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 15921 | 0.71 | 0.516695 |
Target: 5'- uGCUGCuGAugaaccacaCGAUAgGCugCGGCGCCu -3' miRNA: 3'- -CGACG-CUuua------GCUGU-UGugGCCGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 2023 | 0.71 | 0.505924 |
Target: 5'- cGCUgGCGAAGUCGcgcagGCGAUagaACaCGGCGCg -3' miRNA: 3'- -CGA-CGCUUUAGC-----UGUUG---UG-GCCGCGg -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 41474 | 0.71 | 0.499507 |
Target: 5'- cGCUGCucauGAUCGACGGCaagccuuugccgccuACCGcCGCCa -3' miRNA: 3'- -CGACGcu--UUAGCUGUUG---------------UGGCcGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 4811 | 0.71 | 0.494188 |
Target: 5'- cGCUGCGGGAUugcuggcCGGCGACA--GGuCGCCg -3' miRNA: 3'- -CGACGCUUUA-------GCUGUUGUggCC-GCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 28382 | 0.72 | 0.488894 |
Target: 5'- --gGCGAGGUguuccaguucgacgcCGGCGGCG-CGGCGCCa -3' miRNA: 3'- cgaCGCUUUA---------------GCUGUUGUgGCCGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 18456 | 0.72 | 0.484679 |
Target: 5'- --cGUGAcGGUCG-CGGCGCCGGCGgCg -3' miRNA: 3'- cgaCGCU-UUAGCuGUUGUGGCCGCgG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 7207 | 0.72 | 0.484679 |
Target: 5'- aGC-GCGAuguccaCGGCAGCAUCuGCGCCg -3' miRNA: 3'- -CGaCGCUuua---GCUGUUGUGGcCGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 23953 | 0.72 | 0.483628 |
Target: 5'- cGCccgGCGAGGUCGGCAuuugccgauucauGCGCguauuCGGCGCa -3' miRNA: 3'- -CGa--CGCUUUAGCUGU-------------UGUG-----GCCGCGg -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 17603 | 0.72 | 0.474217 |
Target: 5'- gGCUGCGc-GUUGuCGAUACCGGCcucgauguuuGCCg -3' miRNA: 3'- -CGACGCuuUAGCuGUUGUGGCCG----------CGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 32778 | 0.72 | 0.473178 |
Target: 5'- gGCgGCGAAGuccgcccUCGGCAccuCGCUGGUGCUg -3' miRNA: 3'- -CGaCGCUUU-------AGCUGUu--GUGGCCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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