miRNA display CGI


Results 41 - 60 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26683 5' -52.6 NC_005808.1 + 28382 0.72 0.488894
Target:  5'- --gGCGAGGUguuccaguucgacgcCGGCGGCG-CGGCGCCa -3'
miRNA:   3'- cgaCGCUUUA---------------GCUGUUGUgGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 4811 0.71 0.494188
Target:  5'- cGCUGCGGGAUugcuggcCGGCGACA--GGuCGCCg -3'
miRNA:   3'- -CGACGCUUUA-------GCUGUUGUggCC-GCGG- -5'
26683 5' -52.6 NC_005808.1 + 41474 0.71 0.499507
Target:  5'- cGCUGCucauGAUCGACGGCaagccuuugccgccuACCGcCGCCa -3'
miRNA:   3'- -CGACGcu--UUAGCUGUUG---------------UGGCcGCGG- -5'
26683 5' -52.6 NC_005808.1 + 2023 0.71 0.505924
Target:  5'- cGCUgGCGAAGUCGcgcagGCGAUagaACaCGGCGCg -3'
miRNA:   3'- -CGA-CGCUUUAGC-----UGUUG---UG-GCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 20028 0.71 0.510221
Target:  5'- cGCgGCGAGaagcggcacaacaacAuccUCGACAACACCGGCacGCg -3'
miRNA:   3'- -CGaCGCUU---------------U---AGCUGUUGUGGCCG--CGg -5'
26683 5' -52.6 NC_005808.1 + 14738 0.71 0.515614
Target:  5'- --gGCGAGcgCGgacacguucuugaGCAGCggcgcgGCCGGCGCCa -3'
miRNA:   3'- cgaCGCUUuaGC-------------UGUUG------UGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 15921 0.71 0.516695
Target:  5'- uGCUGCuGAugaaccacaCGAUAgGCugCGGCGCCu -3'
miRNA:   3'- -CGACG-CUuua------GCUGU-UGugGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 38564 0.71 0.527557
Target:  5'- gGCUGCGc--UCGACccgcgcggcauGACGCUGGUgGCCg -3'
miRNA:   3'- -CGACGCuuuAGCUG-----------UUGUGGCCG-CGG- -5'
26683 5' -52.6 NC_005808.1 + 25143 0.71 0.527557
Target:  5'- --gGCGAAgaaGUCGAUAACccACCGGC-CCu -3'
miRNA:   3'- cgaCGCUU---UAGCUGUUG--UGGCCGcGG- -5'
26683 5' -52.6 NC_005808.1 + 34577 0.71 0.538503
Target:  5'- gGCUGUcac--CGGCGAaGCUGGCGCCa -3'
miRNA:   3'- -CGACGcuuuaGCUGUUgUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 24479 0.7 0.546211
Target:  5'- uGCUGCuuggccugcgccagGAAGUCGuaGGgGCUGGCGCCc -3'
miRNA:   3'- -CGACG--------------CUUUAGCugUUgUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 29514 0.7 0.549525
Target:  5'- aUUGCGcg--CGugGAgGCCGaGCGCCa -3'
miRNA:   3'- cGACGCuuuaGCugUUgUGGC-CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 16321 0.7 0.549525
Target:  5'- --aGCGAGuaCGACAugGCCgauucGGUGCCa -3'
miRNA:   3'- cgaCGCUUuaGCUGUugUGG-----CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 9293 0.7 0.560617
Target:  5'- gGCUGCGcauuGAcuuccUCGGCGAC-CUGGCGgCg -3'
miRNA:   3'- -CGACGCu---UU-----AGCUGUUGuGGCCGCgG- -5'
26683 5' -52.6 NC_005808.1 + 34411 0.7 0.560617
Target:  5'- cGCUGaCGAAcg-GGCAggACGCCaGCGCCu -3'
miRNA:   3'- -CGAC-GCUUuagCUGU--UGUGGcCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 7545 0.7 0.560617
Target:  5'- gGCgGCGugcUCGAU--CugCGGCGCCa -3'
miRNA:   3'- -CGaCGCuuuAGCUGuuGugGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 39052 0.7 0.560617
Target:  5'- uGCUGCGcuguUCGGCGGCAgCUGGCaCUa -3'
miRNA:   3'- -CGACGCuuu-AGCUGUUGU-GGCCGcGG- -5'
26683 5' -52.6 NC_005808.1 + 30158 0.7 0.560617
Target:  5'- aGCaUGa-AGGUCGGCGACAUCGacaGCGCCa -3'
miRNA:   3'- -CG-ACgcUUUAGCUGUUGUGGC---CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 5508 0.7 0.560617
Target:  5'- uGCUGCcaAAGUCguagGAC-ACGCCGGcCGCCc -3'
miRNA:   3'- -CGACGc-UUUAG----CUGuUGUGGCC-GCGG- -5'
26683 5' -52.6 NC_005808.1 + 32958 0.7 0.57177
Target:  5'- gGCUGCGucGAUuacUGGCAAgAcCCGGaCGCCa -3'
miRNA:   3'- -CGACGCu-UUA---GCUGUUgU-GGCC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.