miRNA display CGI


Results 41 - 60 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26683 5' -52.6 NC_005808.1 + 29778 0.66 0.821221
Target:  5'- cGCgugcGCGAGAuuUCGGCAuACGCUGucucGCGCUc -3'
miRNA:   3'- -CGa---CGCUUU--AGCUGU-UGUGGC----CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 3687 0.66 0.7919
Target:  5'- -gUGCGAAuccaccaCGGCGACGCgcugccccaugCGGCGCa -3'
miRNA:   3'- cgACGCUUua-----GCUGUUGUG-----------GCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 27954 0.66 0.781758
Target:  5'- aGgUGCaaGGuaucAAUCuGC-GCACCGGCGCCg -3'
miRNA:   3'- -CgACG--CU----UUAGcUGuUGUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 23825 0.66 0.821221
Target:  5'- cCUuuGAAGU--GCGGCACCGGCGUg -3'
miRNA:   3'- cGAcgCUUUAgcUGUUGUGGCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 32721 0.66 0.821221
Target:  5'- cGCgccugGcCGAGAa--GCAgcGCGCCGGUGCCa -3'
miRNA:   3'- -CGa----C-GCUUUagcUGU--UGUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 27385 0.66 0.810674
Target:  5'- -gUGuCGAuGUCGGCGGaaaucgcCAUCGGCGCa -3'
miRNA:   3'- cgAC-GCUuUAGCUGUU-------GUGGCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 10298 0.66 0.811643
Target:  5'- gGCgGCGAugaGGUCGcGCAacGCGCUGGUGUUu -3'
miRNA:   3'- -CGaCGCU---UUAGC-UGU--UGUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 25663 0.66 0.811643
Target:  5'- cGCUGC----UgGACGGCGCC-GUGCCc -3'
miRNA:   3'- -CGACGcuuuAgCUGUUGUGGcCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 25297 0.66 0.781758
Target:  5'- -aUGcCGGAAUgGAUGcGCGCCcgcGGCGCCg -3'
miRNA:   3'- cgAC-GCUUUAgCUGU-UGUGG---CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 13935 0.66 0.7919
Target:  5'- cGCUgGCGAGGcCGcCGGCACCGaucuggcacuGCGCg -3'
miRNA:   3'- -CGA-CGCUUUaGCuGUUGUGGC----------CGCGg -5'
26683 5' -52.6 NC_005808.1 + 13562 0.66 0.801865
Target:  5'- cGCcgGUGGGuAUCGACcuGGCcgaaGCgCGGCGCCu -3'
miRNA:   3'- -CGa-CGCUU-UAGCUG--UUG----UG-GCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 39608 0.66 0.810674
Target:  5'- uGCUGCGcuauUCGGCGGCaACUGGaacaacaCGUCg -3'
miRNA:   3'- -CGACGCuuu-AGCUGUUG-UGGCC-------GCGG- -5'
26683 5' -52.6 NC_005808.1 + 34067 0.66 0.7919
Target:  5'- cCUGCGAuaccUgGGCAAguuCGCCGGCGaCa -3'
miRNA:   3'- cGACGCUuu--AgCUGUU---GUGGCCGCgG- -5'
26683 5' -52.6 NC_005808.1 + 26106 0.66 0.781758
Target:  5'- cGCUGgUGGA--CGACAAUAUC-GCGCCc -3'
miRNA:   3'- -CGAC-GCUUuaGCUGUUGUGGcCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 33593 0.66 0.821221
Target:  5'- cGCUGgCGAAucCGGCAcggccacCGCUGGCGgCa -3'
miRNA:   3'- -CGAC-GCUUuaGCUGUu------GUGGCCGCgG- -5'
26683 5' -52.6 NC_005808.1 + 38380 0.67 0.739669
Target:  5'- uCUGCGA---CGAUGGCACgGugcGCGCCg -3'
miRNA:   3'- cGACGCUuuaGCUGUUGUGgC---CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 23869 0.67 0.739669
Target:  5'- --cGCGu--UCGACGGCAuCCcGUGCCg -3'
miRNA:   3'- cgaCGCuuuAGCUGUUGU-GGcCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 10595 0.67 0.739669
Target:  5'- aGCgUGuCGAGGguuUCGcACAggACGCUGGCGUCg -3'
miRNA:   3'- -CG-AC-GCUUU---AGC-UGU--UGUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 10286 0.67 0.750394
Target:  5'- cCUGU-AGGUCGucCAGCACCucggGGUGCCa -3'
miRNA:   3'- cGACGcUUUAGCu-GUUGUGG----CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 34665 0.67 0.771451
Target:  5'- gGCcgugGCGuGAagGugGACGCCGaGCGCa -3'
miRNA:   3'- -CGa---CGCuUUagCugUUGUGGC-CGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.