miRNA display CGI


Results 21 - 40 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26683 5' -52.6 NC_005808.1 + 4250 0.66 0.801865
Target:  5'- --gGCGuAGUCGGugccggccguCAGCGCCGGCauggugaugGCCg -3'
miRNA:   3'- cgaCGCuUUAGCU----------GUUGUGGCCG---------CGG- -5'
26683 5' -52.6 NC_005808.1 + 36711 0.66 0.801865
Target:  5'- uCUGCGGugggcguuGAUCGACGagaacgucGCGCuCuGCGCCc -3'
miRNA:   3'- cGACGCU--------UUAGCUGU--------UGUG-GcCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 41326 0.66 0.811643
Target:  5'- cGCUG-Gc---CGGgAAUACCGGCGCUc -3'
miRNA:   3'- -CGACgCuuuaGCUgUUGUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 475 0.66 0.780734
Target:  5'- cGCUGUcgcggucGGAugccUCGGCAGCAUacuGCGCCg -3'
miRNA:   3'- -CGACG-------CUUu---AGCUGUUGUGgc-CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 16061 0.66 0.821221
Target:  5'- --cGCGcAcgUGGCcgccGCGCgCGGCGCCg -3'
miRNA:   3'- cgaCGCuUuaGCUGu---UGUG-GCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 32642 0.66 0.781758
Target:  5'- cGCUGUccuGUCGAagu--UCGGCGCCg -3'
miRNA:   3'- -CGACGcuuUAGCUguuguGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 34839 0.66 0.790893
Target:  5'- gGC-GCGAGccuggauuccuucGUCGccaACAGCaaGCCGGcCGCCg -3'
miRNA:   3'- -CGaCGCUU-------------UAGC---UGUUG--UGGCC-GCGG- -5'
26683 5' -52.6 NC_005808.1 + 26106 0.66 0.781758
Target:  5'- cGCUGgUGGA--CGACAAUAUC-GCGCCc -3'
miRNA:   3'- -CGAC-GCUUuaGCUGUUGUGGcCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 27954 0.66 0.781758
Target:  5'- aGgUGCaaGGuaucAAUCuGC-GCACCGGCGCCg -3'
miRNA:   3'- -CgACG--CU----UUAGcUGuUGUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 27492 0.66 0.781758
Target:  5'- --cGCGAGGaugcCGGCGGCcUCGGcCGCCa -3'
miRNA:   3'- cgaCGCUUUa---GCUGUUGuGGCC-GCGG- -5'
26683 5' -52.6 NC_005808.1 + 23825 0.66 0.821221
Target:  5'- cCUuuGAAGU--GCGGCACCGGCGUg -3'
miRNA:   3'- cGAcgCUUUAgcUGUUGUGGCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 32360 0.66 0.781758
Target:  5'- cGCUGCGG--UCGcCGccgagGCcCCGGcCGCCc -3'
miRNA:   3'- -CGACGCUuuAGCuGU-----UGuGGCC-GCGG- -5'
26683 5' -52.6 NC_005808.1 + 5287 0.66 0.801865
Target:  5'- cGCgGCGuuGUCGGCca---CGGCGUCg -3'
miRNA:   3'- -CGaCGCuuUAGCUGuugugGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 13625 0.66 0.801865
Target:  5'- aGCauCGGuagCGGCAGCAaguCCGGCGCg -3'
miRNA:   3'- -CGacGCUuuaGCUGUUGU---GGCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 381 0.66 0.7919
Target:  5'- ---aCGAAAUaGACGAUGCCcagGGCGCCc -3'
miRNA:   3'- cgacGCUUUAgCUGUUGUGG---CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 8663 0.66 0.7919
Target:  5'- --cGCGcgGUCGGCAuuGCguGCCGcGCGCa -3'
miRNA:   3'- cgaCGCuuUAGCUGU--UG--UGGC-CGCGg -5'
26683 5' -52.6 NC_005808.1 + 39783 0.66 0.795908
Target:  5'- gGCcGCGAgcaccuggcccgacgAAUCGACGaagugggcGCACCuGCGCa -3'
miRNA:   3'- -CGaCGCU---------------UUAGCUGU--------UGUGGcCGCGg -5'
26683 5' -52.6 NC_005808.1 + 3480 0.66 0.805799
Target:  5'- cGCggGCGAGuUCGACGGC-CCGcuguaccaguacgcaGCGCg -3'
miRNA:   3'- -CGa-CGCUUuAGCUGUUGuGGC---------------CGCGg -5'
26683 5' -52.6 NC_005808.1 + 7637 0.66 0.811643
Target:  5'- gGC-GCGGc-UCGACccACGCCGGCuccuuGCCg -3'
miRNA:   3'- -CGaCGCUuuAGCUGu-UGUGGCCG-----CGG- -5'
26683 5' -52.6 NC_005808.1 + 10684 0.66 0.7919
Target:  5'- aGUUGCGucuuGA-CGGCAGCGCgcaCGGCcucgGCCg -3'
miRNA:   3'- -CGACGCu---UUaGCUGUUGUG---GCCG----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.