Results 1 - 20 of 214 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26683 | 5' | -52.6 | NC_005808.1 | + | 3480 | 0.66 | 0.805799 |
Target: 5'- cGCggGCGAGuUCGACGGC-CCGcuguaccaguacgcaGCGCg -3' miRNA: 3'- -CGa-CGCUUuAGCUGUUGuGGC---------------CGCGg -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 29001 | 0.66 | 0.811643 |
Target: 5'- cCU-CGuuAUCGACGuagGCgACCaGGCGCCg -3' miRNA: 3'- cGAcGCuuUAGCUGU---UG-UGG-CCGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 40276 | 0.66 | 0.811643 |
Target: 5'- gGCUGCGcGAUCuguGCcuguCGCUGGaCGCCc -3' miRNA: 3'- -CGACGCuUUAGc--UGuu--GUGGCC-GCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 39846 | 0.66 | 0.811643 |
Target: 5'- gGCaGUGG--UCGGCAcgcccgagcaGCGCCGG-GCCg -3' miRNA: 3'- -CGaCGCUuuAGCUGU----------UGUGGCCgCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 13625 | 0.66 | 0.801865 |
Target: 5'- aGCauCGGuagCGGCAGCAaguCCGGCGCg -3' miRNA: 3'- -CGacGCUuuaGCUGUUGU---GGCCGCGg -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 381 | 0.66 | 0.7919 |
Target: 5'- ---aCGAAAUaGACGAUGCCcagGGCGCCc -3' miRNA: 3'- cgacGCUUUAgCUGUUGUGG---CCGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 39783 | 0.66 | 0.795908 |
Target: 5'- gGCcGCGAgcaccuggcccgacgAAUCGACGaagugggcGCACCuGCGCa -3' miRNA: 3'- -CGaCGCU---------------UUAGCUGU--------UGUGGcCGCGg -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 27492 | 0.66 | 0.781758 |
Target: 5'- --cGCGAGGaugcCGGCGGCcUCGGcCGCCa -3' miRNA: 3'- cgaCGCUUUa---GCUGUUGuGGCC-GCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 8663 | 0.66 | 0.7919 |
Target: 5'- --cGCGcgGUCGGCAuuGCguGCCGcGCGCa -3' miRNA: 3'- cgaCGCuuUAGCUGU--UG--UGGC-CGCGg -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 1463 | 0.66 | 0.7919 |
Target: 5'- --gGCGcgGUCGGCGGCcucCUGGCagGCCg -3' miRNA: 3'- cgaCGCuuUAGCUGUUGu--GGCCG--CGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 475 | 0.66 | 0.780734 |
Target: 5'- cGCUGUcgcggucGGAugccUCGGCAGCAUacuGCGCCg -3' miRNA: 3'- -CGACG-------CUUu---AGCUGUUGUGgc-CGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 34839 | 0.66 | 0.790893 |
Target: 5'- gGC-GCGAGccuggauuccuucGUCGccaACAGCaaGCCGGcCGCCg -3' miRNA: 3'- -CGaCGCUU-------------UAGC---UGUUG--UGGCC-GCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 10684 | 0.66 | 0.7919 |
Target: 5'- aGUUGCGucuuGA-CGGCAGCGCgcaCGGCcucgGCCg -3' miRNA: 3'- -CGACGCu---UUaGCUGUUGUG---GCCG----CGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 28505 | 0.66 | 0.811643 |
Target: 5'- aUUGcCGAAcUCGGuCAucuGCCGGCGCUg -3' miRNA: 3'- cGAC-GCUUuAGCU-GUug-UGGCCGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 32642 | 0.66 | 0.781758 |
Target: 5'- cGCUGUccuGUCGAagu--UCGGCGCCg -3' miRNA: 3'- -CGACGcuuUAGCUguuguGGCCGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 36711 | 0.66 | 0.801865 |
Target: 5'- uCUGCGGugggcguuGAUCGACGagaacgucGCGCuCuGCGCCc -3' miRNA: 3'- cGACGCU--------UUAGCUGU--------UGUG-GcCGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 7637 | 0.66 | 0.811643 |
Target: 5'- gGC-GCGGc-UCGACccACGCCGGCuccuuGCCg -3' miRNA: 3'- -CGaCGCUuuAGCUGu-UGUGGCCG-----CGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 5287 | 0.66 | 0.801865 |
Target: 5'- cGCgGCGuuGUCGGCca---CGGCGUCg -3' miRNA: 3'- -CGaCGCuuUAGCUGuugugGCCGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 14023 | 0.66 | 0.821221 |
Target: 5'- cGCUGcCGGuggcCGACgugcgcgccgcgAugGCCGGCgGCCg -3' miRNA: 3'- -CGAC-GCUuua-GCUG------------UugUGGCCG-CGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 32360 | 0.66 | 0.781758 |
Target: 5'- cGCUGCGG--UCGcCGccgagGCcCCGGcCGCCc -3' miRNA: 3'- -CGACGCUuuAGCuGU-----UGuGGCC-GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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