miRNA display CGI


Results 1 - 20 of 214 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26683 5' -52.6 NC_005808.1 + 171 0.68 0.695743
Target:  5'- aGCUGCcgcg-CGcAgAAUGCCGGCGUCa -3'
miRNA:   3'- -CGACGcuuuaGC-UgUUGUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 202 0.68 0.717886
Target:  5'- cGCUGCcGGG-CGACAcgGCgaACUGGCGCa -3'
miRNA:   3'- -CGACGcUUUaGCUGU--UG--UGGCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 381 0.66 0.7919
Target:  5'- ---aCGAAAUaGACGAUGCCcagGGCGCCc -3'
miRNA:   3'- cgacGCUUUAgCUGUUGUGG---CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 475 0.66 0.780734
Target:  5'- cGCUGUcgcggucGGAugccUCGGCAGCAUacuGCGCCg -3'
miRNA:   3'- -CGACG-------CUUu---AGCUGUUGUGgc-CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 621 0.69 0.605504
Target:  5'- aGCaGCGccGUgGACAcgGCGuCCGGCGUCg -3'
miRNA:   3'- -CGaCGCuuUAgCUGU--UGU-GGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 679 0.68 0.706853
Target:  5'- gGCcGCcua--CGGCGGCGCCGGCcggGCCg -3'
miRNA:   3'- -CGaCGcuuuaGCUGUUGUGGCCG---CGG- -5'
26683 5' -52.6 NC_005808.1 + 731 0.67 0.750394
Target:  5'- --gGCGGcuuugcCGACAACGCCGGCcagGUCu -3'
miRNA:   3'- cgaCGCUuua---GCUGUUGUGGCCG---CGG- -5'
26683 5' -52.6 NC_005808.1 + 1061 0.68 0.717886
Target:  5'- cGCUcGCGGAuuUCcuguGCGAC-CCGGCGCg -3'
miRNA:   3'- -CGA-CGCUUu-AGc---UGUUGuGGCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 1338 0.68 0.695743
Target:  5'- aGC-GCGAGgaagccgugGUCGGCGGCcuugcgcauCCGGCGaCCg -3'
miRNA:   3'- -CGaCGCUU---------UAGCUGUUGu--------GGCCGC-GG- -5'
26683 5' -52.6 NC_005808.1 + 1463 0.66 0.7919
Target:  5'- --gGCGcgGUCGGCGGCcucCUGGCagGCCg -3'
miRNA:   3'- cgaCGCuuUAGCUGUUGu--GGCCG--CGG- -5'
26683 5' -52.6 NC_005808.1 + 1994 0.68 0.700196
Target:  5'- gGCcGCGAGGUCGgacuugaagugguacGCcaccAGCACCGGCauaccgGCCg -3'
miRNA:   3'- -CGaCGCUUUAGC---------------UG----UUGUGGCCG------CGG- -5'
26683 5' -52.6 NC_005808.1 + 2023 0.71 0.505924
Target:  5'- cGCUgGCGAAGUCGcgcagGCGAUagaACaCGGCGCg -3'
miRNA:   3'- -CGA-CGCUUUAGC-----UGUUG---UG-GCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 2076 0.69 0.605504
Target:  5'- aGCU-UGAcAUCGugGACAUCGGC-CCa -3'
miRNA:   3'- -CGAcGCUuUAGCugUUGUGGCCGcGG- -5'
26683 5' -52.6 NC_005808.1 + 2417 0.67 0.765194
Target:  5'- --aGCGuAGGUguaCGGCAGCAggccggccucgaagaUCGGCGCCa -3'
miRNA:   3'- cgaCGC-UUUA---GCUGUUGU---------------GGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 3480 0.66 0.805799
Target:  5'- cGCggGCGAGuUCGACGGC-CCGcuguaccaguacgcaGCGCg -3'
miRNA:   3'- -CGa-CGCUUuAGCUGUUGuGGC---------------CGCGg -5'
26683 5' -52.6 NC_005808.1 + 3687 0.66 0.7919
Target:  5'- -gUGCGAAuccaccaCGGCGACGCgcugccccaugCGGCGCa -3'
miRNA:   3'- cgACGCUUua-----GCUGUUGUG-----------GCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 4209 0.66 0.821221
Target:  5'- ---uUGGAAUCGGCGcGCACC-GUGCCa -3'
miRNA:   3'- cgacGCUUUAGCUGU-UGUGGcCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 4250 0.66 0.801865
Target:  5'- --gGCGuAGUCGGugccggccguCAGCGCCGGCauggugaugGCCg -3'
miRNA:   3'- cgaCGCuUUAGCU----------GUUGUGGCCG---------CGG- -5'
26683 5' -52.6 NC_005808.1 + 4289 0.67 0.759939
Target:  5'- gGCUGUacuGGUUGACGcccauguaggacaGCuuGCCGGCGUCa -3'
miRNA:   3'- -CGACGcu-UUAGCUGU-------------UG--UGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 4811 0.71 0.494188
Target:  5'- cGCUGCGGGAUugcuggcCGGCGACA--GGuCGCCg -3'
miRNA:   3'- -CGACGCUUUA-------GCUGUUGUggCC-GCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.