miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26683 5' -52.6 NC_005808.1 + 41902 0.66 0.811643
Target:  5'- --gGCGguAUCuugGGCGcCcgGCCGGCGCCg -3'
miRNA:   3'- cgaCGCuuUAG---CUGUuG--UGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 41832 0.66 0.781758
Target:  5'- cGCUGCGGAggacaucuaaAUgGACuggaaaGACcugGCCGGCGUUg -3'
miRNA:   3'- -CGACGCUU----------UAgCUG------UUG---UGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 41601 0.73 0.385719
Target:  5'- cGCUGCGGugaaCcACGGCACCGGCcaggcgGCCa -3'
miRNA:   3'- -CGACGCUuua-GcUGUUGUGGCCG------CGG- -5'
26683 5' -52.6 NC_005808.1 + 41474 0.71 0.499507
Target:  5'- cGCUGCucauGAUCGACGGCaagccuuugccgccuACCGcCGCCa -3'
miRNA:   3'- -CGACGcu--UUAGCUGUUG---------------UGGCcGCGG- -5'
26683 5' -52.6 NC_005808.1 + 41326 0.66 0.811643
Target:  5'- cGCUG-Gc---CGGgAAUACCGGCGCUc -3'
miRNA:   3'- -CGACgCuuuaGCUgUUGUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 40276 0.66 0.811643
Target:  5'- gGCUGCGcGAUCuguGCcuguCGCUGGaCGCCc -3'
miRNA:   3'- -CGACGCuUUAGc--UGuu--GUGGCC-GCGG- -5'
26683 5' -52.6 NC_005808.1 + 39846 0.66 0.811643
Target:  5'- gGCaGUGG--UCGGCAcgcccgagcaGCGCCGG-GCCg -3'
miRNA:   3'- -CGaCGCUuuAGCUGU----------UGUGGCCgCGG- -5'
26683 5' -52.6 NC_005808.1 + 39783 0.66 0.795908
Target:  5'- gGCcGCGAgcaccuggcccgacgAAUCGACGaagugggcGCACCuGCGCa -3'
miRNA:   3'- -CGaCGCU---------------UUAGCUGU--------UGUGGcCGCGg -5'
26683 5' -52.6 NC_005808.1 + 39659 0.68 0.721179
Target:  5'- cGCUGCGAAcuggaacaacgggccGUCGAacucgaacgcgaaCAucgggGCGCgCGGCGUCu -3'
miRNA:   3'- -CGACGCUU---------------UAGCU-------------GU-----UGUG-GCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 39608 0.66 0.810674
Target:  5'- uGCUGCGcuauUCGGCGGCaACUGGaacaacaCGUCg -3'
miRNA:   3'- -CGACGCuuu-AGCUGUUG-UGGCC-------GCGG- -5'
26683 5' -52.6 NC_005808.1 + 39135 0.67 0.760993
Target:  5'- cGCccGCGAAcAUCGG-GGCGCgCGGCGUCu -3'
miRNA:   3'- -CGa-CGCUU-UAGCUgUUGUG-GCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 39052 0.7 0.560617
Target:  5'- uGCUGCGcuguUCGGCGGCAgCUGGCaCUa -3'
miRNA:   3'- -CGACGCuuu-AGCUGUUGU-GGCCGcGG- -5'
26683 5' -52.6 NC_005808.1 + 38843 0.67 0.771451
Target:  5'- gGCUaCGuccagCGGCGGCACCGacGUGCCc -3'
miRNA:   3'- -CGAcGCuuua-GCUGUUGUGGC--CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 38718 0.72 0.443539
Target:  5'- gGCgGCGA---CGGCAGCGCggccuacagcgaCGGCGCCu -3'
miRNA:   3'- -CGaCGCUuuaGCUGUUGUG------------GCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 38564 0.71 0.527557
Target:  5'- gGCUGCGc--UCGACccgcgcggcauGACGCUGGUgGCCg -3'
miRNA:   3'- -CGACGCuuuAGCUG-----------UUGUGGCCG-CGG- -5'
26683 5' -52.6 NC_005808.1 + 38380 0.67 0.739669
Target:  5'- uCUGCGA---CGAUGGCACgGugcGCGCCg -3'
miRNA:   3'- cGACGCUuuaGCUGUUGUGgC---CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 38082 0.69 0.61681
Target:  5'- uCUGCGAug-CGcucaAGCGCCuguGGCGCCg -3'
miRNA:   3'- cGACGCUuuaGCug--UUGUGG---CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 37763 0.73 0.385719
Target:  5'- cGCUuuccGUGAAuUCGACGacgGCGCCGGCcCCg -3'
miRNA:   3'- -CGA----CGCUUuAGCUGU---UGUGGCCGcGG- -5'
26683 5' -52.6 NC_005808.1 + 37647 0.67 0.739669
Target:  5'- aGC-GCGAuacgCGGCuGCAUCguGGCGCCc -3'
miRNA:   3'- -CGaCGCUuua-GCUGuUGUGG--CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 37329 0.7 0.594222
Target:  5'- cGCcGCGAAcAUCaACacgGugGCCGGUGCCa -3'
miRNA:   3'- -CGaCGCUU-UAGcUG---UugUGGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.