miRNA display CGI


Results 21 - 40 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26683 5' -52.6 NC_005808.1 + 37254 0.72 0.452627
Target:  5'- gGCUGUcgccaacGAcAUCGACAGCgugguauccgugGCCGGCGaCCu -3'
miRNA:   3'- -CGACG-------CUuUAGCUGUUG------------UGGCCGC-GG- -5'
26683 5' -52.6 NC_005808.1 + 37143 0.67 0.739669
Target:  5'- cGCgGCGugauGGUCGAUAccgaccucgcccACGCCGccauccGCGCCg -3'
miRNA:   3'- -CGaCGCu---UUAGCUGU------------UGUGGC------CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 37011 0.74 0.341497
Target:  5'- --gGCGGAcAUCGACAcgguggcggccaGCGuuGGCGCCg -3'
miRNA:   3'- cgaCGCUU-UAGCUGU------------UGUggCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 36779 0.69 0.612285
Target:  5'- uGCUGCGGcacgccaugccCGACuaucCGCUGGCGCUg -3'
miRNA:   3'- -CGACGCUuua--------GCUGuu--GUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 36711 0.66 0.801865
Target:  5'- uCUGCGGugggcguuGAUCGACGagaacgucGCGCuCuGCGCCc -3'
miRNA:   3'- cGACGCU--------UUAGCUGU--------UGUG-GcCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 36181 0.75 0.301057
Target:  5'- cGCgaGCGAGGacgaguUCGACGACAUCaccgagGGCGCCg -3'
miRNA:   3'- -CGa-CGCUUU------AGCUGUUGUGG------CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 35340 0.73 0.433562
Target:  5'- aGCUGCacaAGGcCGGCGACAUCGGCccgcGCCa -3'
miRNA:   3'- -CGACGc--UUUaGCUGUUGUGGCCG----CGG- -5'
26683 5' -52.6 NC_005808.1 + 35283 0.69 0.655294
Target:  5'- uGCUGCGuucgcagaccAUCGACGGCGCCauccgcgagcacuacGGCcCCg -3'
miRNA:   3'- -CGACGCuu--------UAGCUGUUGUGG---------------CCGcGG- -5'
26683 5' -52.6 NC_005808.1 + 34891 0.74 0.341497
Target:  5'- cGCUGCaGuucAUCGGCAA-GCCGGcCGCCg -3'
miRNA:   3'- -CGACG-Cuu-UAGCUGUUgUGGCC-GCGG- -5'
26683 5' -52.6 NC_005808.1 + 34839 0.66 0.790893
Target:  5'- gGC-GCGAGccuggauuccuucGUCGccaACAGCaaGCCGGcCGCCg -3'
miRNA:   3'- -CGaCGCUU-------------UAGC---UGUUG--UGGCC-GCGG- -5'
26683 5' -52.6 NC_005808.1 + 34815 0.8 0.15288
Target:  5'- gGCgGCGAAGg-GugGACGCCGGCGCa -3'
miRNA:   3'- -CGaCGCUUUagCugUUGUGGCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 34665 0.67 0.771451
Target:  5'- gGCcgugGCGuGAagGugGACGCCGaGCGCa -3'
miRNA:   3'- -CGa---CGCuUUagCugUUGUGGC-CGCGg -5'
26683 5' -52.6 NC_005808.1 + 34577 0.71 0.538503
Target:  5'- gGCUGUcac--CGGCGAaGCUGGCGCCa -3'
miRNA:   3'- -CGACGcuuuaGCUGUUgUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 34411 0.7 0.560617
Target:  5'- cGCUGaCGAAcg-GGCAggACGCCaGCGCCu -3'
miRNA:   3'- -CGAC-GCUUuagCUGU--UGUGGcCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 34411 0.66 0.811643
Target:  5'- uGC-GCGAugaAAUCGccgGCAGCAuCCGGgCGCa -3'
miRNA:   3'- -CGaCGCU---UUAGC---UGUUGU-GGCC-GCGg -5'
26683 5' -52.6 NC_005808.1 + 34132 0.74 0.350042
Target:  5'- gGCUGCGgcAUCGcaggccaccuCGACGCCGacaucGCGCCg -3'
miRNA:   3'- -CGACGCuuUAGCu---------GUUGUGGC-----CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 34067 0.66 0.7919
Target:  5'- cCUGCGAuaccUgGGCAAguuCGCCGGCGaCa -3'
miRNA:   3'- cGACGCUuu--AgCUGUU---GUGGCCGCgG- -5'
26683 5' -52.6 NC_005808.1 + 33593 0.66 0.821221
Target:  5'- cGCUGgCGAAucCGGCAcggccacCGCUGGCGgCa -3'
miRNA:   3'- -CGAC-GCUUuaGCUGUu------GUGGCCGCgG- -5'
26683 5' -52.6 NC_005808.1 + 32958 0.7 0.57177
Target:  5'- gGCUGCGucGAUuacUGGCAAgAcCCGGaCGCCa -3'
miRNA:   3'- -CGACGCu-UUA---GCUGUUgU-GGCC-GCGG- -5'
26683 5' -52.6 NC_005808.1 + 32778 0.72 0.473178
Target:  5'- gGCgGCGAAGuccgcccUCGGCAccuCGCUGGUGCUg -3'
miRNA:   3'- -CGaCGCUUU-------AGCUGUu--GUGGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.