miRNA display CGI


Results 21 - 40 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26683 5' -52.6 NC_005808.1 + 4813 0.7 0.594222
Target:  5'- aGCuUGUaGAGGUCGGg---GCCGGCGCCg -3'
miRNA:   3'- -CG-ACG-CUUUAGCUguugUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 4910 0.67 0.775593
Target:  5'- uGUU-CGAcaGGUCGGCGACgACCagcuucuugcccucgGGCGCCa -3'
miRNA:   3'- -CGAcGCU--UUAGCUGUUG-UGG---------------CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 5287 0.66 0.801865
Target:  5'- cGCgGCGuuGUCGGCca---CGGCGUCg -3'
miRNA:   3'- -CGaCGCuuUAGCUGuugugGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 5355 0.67 0.760993
Target:  5'- cGCUGCGuggcCGcCuGCACC-GCGCCc -3'
miRNA:   3'- -CGACGCuuuaGCuGuUGUGGcCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 5508 0.7 0.560617
Target:  5'- uGCUGCcaAAGUCguagGAC-ACGCCGGcCGCCc -3'
miRNA:   3'- -CGACGc-UUUAG----CUGuUGUGGCC-GCGG- -5'
26683 5' -52.6 NC_005808.1 + 5560 0.67 0.771451
Target:  5'- cGCcaCGguAUCGACGGCGCCaacgcuGGcCGCCa -3'
miRNA:   3'- -CGacGCuuUAGCUGUUGUGG------CC-GCGG- -5'
26683 5' -52.6 NC_005808.1 + 6364 0.67 0.760993
Target:  5'- --gGCGAAccggcccacGUCGGCAAUcaggcgcagGCCGGCcgGCCc -3'
miRNA:   3'- cgaCGCUU---------UAGCUGUUG---------UGGCCG--CGG- -5'
26683 5' -52.6 NC_005808.1 + 6374 0.68 0.683447
Target:  5'- cGCUGgGuuacaccAGGUCGGCcGC-CgCGGCGCCc -3'
miRNA:   3'- -CGACgC-------UUUAGCUGuUGuG-GCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 6599 0.76 0.257534
Target:  5'- gGCUGCGGucuuuGUCGAUGACcaGCgGGCGCg -3'
miRNA:   3'- -CGACGCUu----UAGCUGUUG--UGgCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 7137 0.74 0.366692
Target:  5'- --cGCGAAGUCGuCGGCugCGGCcuggaugaccaggGCCg -3'
miRNA:   3'- cgaCGCUUUAGCuGUUGugGCCG-------------CGG- -5'
26683 5' -52.6 NC_005808.1 + 7207 0.72 0.484679
Target:  5'- aGC-GCGAuguccaCGGCAGCAUCuGCGCCg -3'
miRNA:   3'- -CGaCGCUuua---GCUGUUGUGGcCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 7325 0.69 0.650772
Target:  5'- uCUGCGAAcgCaGCAGCcgGuuGGCGUCg -3'
miRNA:   3'- cGACGCUUuaGcUGUUG--UggCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 7545 0.7 0.560617
Target:  5'- gGCgGCGugcUCGAU--CugCGGCGCCa -3'
miRNA:   3'- -CGaCGCuuuAGCUGuuGugGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 7637 0.66 0.811643
Target:  5'- gGC-GCGGc-UCGACccACGCCGGCuccuuGCCg -3'
miRNA:   3'- -CGaCGCUuuAGCUGu-UGUGGCCG-----CGG- -5'
26683 5' -52.6 NC_005808.1 + 7650 0.69 0.62813
Target:  5'- cUUGCaGAAUCGACAuugcuucuCACCGgGgGCCa -3'
miRNA:   3'- cGACGcUUUAGCUGUu-------GUGGC-CgCGG- -5'
26683 5' -52.6 NC_005808.1 + 7748 0.78 0.219296
Target:  5'- cCUGCGcAGUCagcgauuGCAGCACCGGCGCg -3'
miRNA:   3'- cGACGCuUUAGc------UGUUGUGGCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 7901 0.67 0.728829
Target:  5'- cGCgUGCGuAGAUCGcCAgcugcucguuGCGCuCGGCGUCc -3'
miRNA:   3'- -CG-ACGC-UUUAGCuGU----------UGUG-GCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 7920 0.69 0.605504
Target:  5'- cUUGcCGAGggCGA--ACACCGGCGCg -3'
miRNA:   3'- cGAC-GCUUuaGCUguUGUGGCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 8398 0.74 0.341497
Target:  5'- gGCUGCGuagccAGUCGGcCAGgGCCGuGCGCUu -3'
miRNA:   3'- -CGACGCu----UUAGCU-GUUgUGGC-CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 8428 0.67 0.739669
Target:  5'- --cGCGGGggcGUCGcGgAACAUCGGCGCg -3'
miRNA:   3'- cgaCGCUU---UAGC-UgUUGUGGCCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.