miRNA display CGI


Results 21 - 40 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26683 5' -52.6 NC_005808.1 + 34132 0.74 0.350042
Target:  5'- gGCUGCGgcAUCGcaggccaccuCGACGCCGacaucGCGCCg -3'
miRNA:   3'- -CGACGCuuUAGCu---------GUUGUGGC-----CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 7137 0.74 0.366692
Target:  5'- --cGCGAAGUCGuCGGCugCGGCcuggaugaccaggGCCg -3'
miRNA:   3'- cgaCGCUUUAGCuGUUGugGCCG-------------CGG- -5'
26683 5' -52.6 NC_005808.1 + 41601 0.73 0.385719
Target:  5'- cGCUGCGGugaaCcACGGCACCGGCcaggcgGCCa -3'
miRNA:   3'- -CGACGCUuua-GcUGUUGUGGCCG------CGG- -5'
26683 5' -52.6 NC_005808.1 + 37763 0.73 0.385719
Target:  5'- cGCUuuccGUGAAuUCGACGacgGCGCCGGCcCCg -3'
miRNA:   3'- -CGA----CGCUUuAGCUGU---UGUGGCCGcGG- -5'
26683 5' -52.6 NC_005808.1 + 23671 0.73 0.395007
Target:  5'- aCUGaCGAAAaaCGcCAGCGCgGGCGCCg -3'
miRNA:   3'- cGAC-GCUUUa-GCuGUUGUGgCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 24124 0.73 0.404437
Target:  5'- --gGUGGAcgaAUCGGcCGACgccGCCGGCGCCg -3'
miRNA:   3'- cgaCGCUU---UAGCU-GUUG---UGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 12050 0.73 0.414008
Target:  5'- aGCgUGuCGAAGUCGAUGGCGCCgauGGUGUCc -3'
miRNA:   3'- -CG-AC-GCUUUAGCUGUUGUGG---CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 11494 0.73 0.423718
Target:  5'- cCUGCGAcaccgcAAagGGCAGCGCCuGCGCUg -3'
miRNA:   3'- cGACGCU------UUagCUGUUGUGGcCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 35340 0.73 0.433562
Target:  5'- aGCUGCacaAGGcCGGCGACAUCGGCccgcGCCa -3'
miRNA:   3'- -CGACGc--UUUaGCUGUUGUGGCCG----CGG- -5'
26683 5' -52.6 NC_005808.1 + 38718 0.72 0.443539
Target:  5'- gGCgGCGA---CGGCAGCGCggccuacagcgaCGGCGCCu -3'
miRNA:   3'- -CGaCGCUuuaGCUGUUGUG------------GCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 37254 0.72 0.452627
Target:  5'- gGCUGUcgccaacGAcAUCGACAGCgugguauccgugGCCGGCGaCCu -3'
miRNA:   3'- -CGACG-------CUuUAGCUGUUG------------UGGCCGC-GG- -5'
26683 5' -52.6 NC_005808.1 + 27819 0.72 0.453643
Target:  5'- --aGCGAcaucgugaagcaGAUCGACAccgacACGCUGcGCGCCa -3'
miRNA:   3'- cgaCGCU------------UUAGCUGU-----UGUGGC-CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 21834 0.72 0.453643
Target:  5'- cGC-GCGAugAGUCGagcgcggcGCAGCGCCucuacGGCGCCa -3'
miRNA:   3'- -CGaCGCU--UUAGC--------UGUUGUGG-----CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 24399 0.72 0.46387
Target:  5'- cGCUGCGcAAGUUGAagaAGCgcaGCCGGC-CCg -3'
miRNA:   3'- -CGACGC-UUUAGCUg--UUG---UGGCCGcGG- -5'
26683 5' -52.6 NC_005808.1 + 32778 0.72 0.473178
Target:  5'- gGCgGCGAAGuccgcccUCGGCAccuCGCUGGUGCUg -3'
miRNA:   3'- -CGaCGCUUU-------AGCUGUu--GUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 17603 0.72 0.474217
Target:  5'- gGCUGCGc-GUUGuCGAUACCGGCcucgauguuuGCCg -3'
miRNA:   3'- -CGACGCuuUAGCuGUUGUGGCCG----------CGG- -5'
26683 5' -52.6 NC_005808.1 + 23953 0.72 0.483628
Target:  5'- cGCccgGCGAGGUCGGCAuuugccgauucauGCGCguauuCGGCGCa -3'
miRNA:   3'- -CGa--CGCUUUAGCUGU-------------UGUG-----GCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 18456 0.72 0.484679
Target:  5'- --cGUGAcGGUCG-CGGCGCCGGCGgCg -3'
miRNA:   3'- cgaCGCU-UUAGCuGUUGUGGCCGCgG- -5'
26683 5' -52.6 NC_005808.1 + 7207 0.72 0.484679
Target:  5'- aGC-GCGAuguccaCGGCAGCAUCuGCGCCg -3'
miRNA:   3'- -CGaCGCUuua---GCUGUUGUGGcCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 9727 0.72 0.484679
Target:  5'- --aGuCGGGcgCGACAAUcUCGGCGCCg -3'
miRNA:   3'- cgaC-GCUUuaGCUGUUGuGGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.