miRNA display CGI


Results 21 - 40 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26683 5' -52.6 NC_005808.1 + 41902 0.66 0.811643
Target:  5'- --gGCGguAUCuugGGCGcCcgGCCGGCGCCg -3'
miRNA:   3'- cgaCGCuuUAG---CUGUuG--UGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 40276 0.66 0.811643
Target:  5'- gGCUGCGcGAUCuguGCcuguCGCUGGaCGCCc -3'
miRNA:   3'- -CGACGCuUUAGc--UGuu--GUGGCC-GCGG- -5'
26683 5' -52.6 NC_005808.1 + 7637 0.66 0.811643
Target:  5'- gGC-GCGGc-UCGACccACGCCGGCuccuuGCCg -3'
miRNA:   3'- -CGaCGCUuuAGCUGu-UGUGGCCG-----CGG- -5'
26683 5' -52.6 NC_005808.1 + 34411 0.66 0.811643
Target:  5'- uGC-GCGAugaAAUCGccgGCAGCAuCCGGgCGCa -3'
miRNA:   3'- -CGaCGCU---UUAGC---UGUUGU-GGCC-GCGg -5'
26683 5' -52.6 NC_005808.1 + 32175 0.66 0.811643
Target:  5'- aGCUGUugGAAAUgaaaagUGGCGAggcCAUCGGCGCg -3'
miRNA:   3'- -CGACG--CUUUA------GCUGUU---GUGGCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 29001 0.66 0.811643
Target:  5'- cCU-CGuuAUCGACGuagGCgACCaGGCGCCg -3'
miRNA:   3'- cGAcGCuuUAGCUGU---UG-UGG-CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 39608 0.66 0.810674
Target:  5'- uGCUGCGcuauUCGGCGGCaACUGGaacaacaCGUCg -3'
miRNA:   3'- -CGACGCuuu-AGCUGUUG-UGGCC-------GCGG- -5'
26683 5' -52.6 NC_005808.1 + 27385 0.66 0.810674
Target:  5'- -gUGuCGAuGUCGGCGGaaaucgcCAUCGGCGCa -3'
miRNA:   3'- cgAC-GCUuUAGCUGUU-------GUGGCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 3480 0.66 0.805799
Target:  5'- cGCggGCGAGuUCGACGGC-CCGcuguaccaguacgcaGCGCg -3'
miRNA:   3'- -CGa-CGCUUuAGCUGUUGuGGC---------------CGCGg -5'
26683 5' -52.6 NC_005808.1 + 13625 0.66 0.801865
Target:  5'- aGCauCGGuagCGGCAGCAaguCCGGCGCg -3'
miRNA:   3'- -CGacGCUuuaGCUGUUGU---GGCCGCGg -5'
26683 5' -52.6 NC_005808.1 + 13562 0.66 0.801865
Target:  5'- cGCcgGUGGGuAUCGACcuGGCcgaaGCgCGGCGCCu -3'
miRNA:   3'- -CGa-CGCUU-UAGCUG--UUG----UG-GCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 12124 0.66 0.801865
Target:  5'- aGCagGUGAcg-CGAUG--ACCGGCGCCc -3'
miRNA:   3'- -CGa-CGCUuuaGCUGUugUGGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 28355 0.66 0.801865
Target:  5'- aGUUGCGc-GUgGACGACGCacuuaaccGCGCCa -3'
miRNA:   3'- -CGACGCuuUAgCUGUUGUGgc------CGCGG- -5'
26683 5' -52.6 NC_005808.1 + 4250 0.66 0.801865
Target:  5'- --gGCGuAGUCGGugccggccguCAGCGCCGGCauggugaugGCCg -3'
miRNA:   3'- cgaCGCuUUAGCU----------GUUGUGGCCG---------CGG- -5'
26683 5' -52.6 NC_005808.1 + 5287 0.66 0.801865
Target:  5'- cGCgGCGuuGUCGGCca---CGGCGUCg -3'
miRNA:   3'- -CGaCGCuuUAGCUGuugugGCCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 36711 0.66 0.801865
Target:  5'- uCUGCGGugggcguuGAUCGACGagaacgucGCGCuCuGCGCCc -3'
miRNA:   3'- cGACGCU--------UUAGCUGU--------UGUG-GcCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 39783 0.66 0.795908
Target:  5'- gGCcGCGAgcaccuggcccgacgAAUCGACGaagugggcGCACCuGCGCa -3'
miRNA:   3'- -CGaCGCU---------------UUAGCUGU--------UGUGGcCGCGg -5'
26683 5' -52.6 NC_005808.1 + 34067 0.66 0.7919
Target:  5'- cCUGCGAuaccUgGGCAAguuCGCCGGCGaCa -3'
miRNA:   3'- cGACGCUuu--AgCUGUU---GUGGCCGCgG- -5'
26683 5' -52.6 NC_005808.1 + 381 0.66 0.7919
Target:  5'- ---aCGAAAUaGACGAUGCCcagGGCGCCc -3'
miRNA:   3'- cgacGCUUUAgCUGUUGUGG---CCGCGG- -5'
26683 5' -52.6 NC_005808.1 + 10684 0.66 0.7919
Target:  5'- aGUUGCGucuuGA-CGGCAGCGCgcaCGGCcucgGCCg -3'
miRNA:   3'- -CGACGCu---UUaGCUGUUGUG---GCCG----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.