Results 21 - 40 of 214 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26683 | 5' | -52.6 | NC_005808.1 | + | 41902 | 0.66 | 0.811643 |
Target: 5'- --gGCGguAUCuugGGCGcCcgGCCGGCGCCg -3' miRNA: 3'- cgaCGCuuUAG---CUGUuG--UGGCCGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 40276 | 0.66 | 0.811643 |
Target: 5'- gGCUGCGcGAUCuguGCcuguCGCUGGaCGCCc -3' miRNA: 3'- -CGACGCuUUAGc--UGuu--GUGGCC-GCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 7637 | 0.66 | 0.811643 |
Target: 5'- gGC-GCGGc-UCGACccACGCCGGCuccuuGCCg -3' miRNA: 3'- -CGaCGCUuuAGCUGu-UGUGGCCG-----CGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 34411 | 0.66 | 0.811643 |
Target: 5'- uGC-GCGAugaAAUCGccgGCAGCAuCCGGgCGCa -3' miRNA: 3'- -CGaCGCU---UUAGC---UGUUGU-GGCC-GCGg -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 32175 | 0.66 | 0.811643 |
Target: 5'- aGCUGUugGAAAUgaaaagUGGCGAggcCAUCGGCGCg -3' miRNA: 3'- -CGACG--CUUUA------GCUGUU---GUGGCCGCGg -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 29001 | 0.66 | 0.811643 |
Target: 5'- cCU-CGuuAUCGACGuagGCgACCaGGCGCCg -3' miRNA: 3'- cGAcGCuuUAGCUGU---UG-UGG-CCGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 39608 | 0.66 | 0.810674 |
Target: 5'- uGCUGCGcuauUCGGCGGCaACUGGaacaacaCGUCg -3' miRNA: 3'- -CGACGCuuu-AGCUGUUG-UGGCC-------GCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 27385 | 0.66 | 0.810674 |
Target: 5'- -gUGuCGAuGUCGGCGGaaaucgcCAUCGGCGCa -3' miRNA: 3'- cgAC-GCUuUAGCUGUU-------GUGGCCGCGg -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 3480 | 0.66 | 0.805799 |
Target: 5'- cGCggGCGAGuUCGACGGC-CCGcuguaccaguacgcaGCGCg -3' miRNA: 3'- -CGa-CGCUUuAGCUGUUGuGGC---------------CGCGg -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 13625 | 0.66 | 0.801865 |
Target: 5'- aGCauCGGuagCGGCAGCAaguCCGGCGCg -3' miRNA: 3'- -CGacGCUuuaGCUGUUGU---GGCCGCGg -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 13562 | 0.66 | 0.801865 |
Target: 5'- cGCcgGUGGGuAUCGACcuGGCcgaaGCgCGGCGCCu -3' miRNA: 3'- -CGa-CGCUU-UAGCUG--UUG----UG-GCCGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 12124 | 0.66 | 0.801865 |
Target: 5'- aGCagGUGAcg-CGAUG--ACCGGCGCCc -3' miRNA: 3'- -CGa-CGCUuuaGCUGUugUGGCCGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 28355 | 0.66 | 0.801865 |
Target: 5'- aGUUGCGc-GUgGACGACGCacuuaaccGCGCCa -3' miRNA: 3'- -CGACGCuuUAgCUGUUGUGgc------CGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 4250 | 0.66 | 0.801865 |
Target: 5'- --gGCGuAGUCGGugccggccguCAGCGCCGGCauggugaugGCCg -3' miRNA: 3'- cgaCGCuUUAGCU----------GUUGUGGCCG---------CGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 5287 | 0.66 | 0.801865 |
Target: 5'- cGCgGCGuuGUCGGCca---CGGCGUCg -3' miRNA: 3'- -CGaCGCuuUAGCUGuugugGCCGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 36711 | 0.66 | 0.801865 |
Target: 5'- uCUGCGGugggcguuGAUCGACGagaacgucGCGCuCuGCGCCc -3' miRNA: 3'- cGACGCU--------UUAGCUGU--------UGUG-GcCGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 39783 | 0.66 | 0.795908 |
Target: 5'- gGCcGCGAgcaccuggcccgacgAAUCGACGaagugggcGCACCuGCGCa -3' miRNA: 3'- -CGaCGCU---------------UUAGCUGU--------UGUGGcCGCGg -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 34067 | 0.66 | 0.7919 |
Target: 5'- cCUGCGAuaccUgGGCAAguuCGCCGGCGaCa -3' miRNA: 3'- cGACGCUuu--AgCUGUU---GUGGCCGCgG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 381 | 0.66 | 0.7919 |
Target: 5'- ---aCGAAAUaGACGAUGCCcagGGCGCCc -3' miRNA: 3'- cgacGCUUUAgCUGUUGUGG---CCGCGG- -5' |
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26683 | 5' | -52.6 | NC_005808.1 | + | 10684 | 0.66 | 0.7919 |
Target: 5'- aGUUGCGucuuGA-CGGCAGCGCgcaCGGCcucgGCCg -3' miRNA: 3'- -CGACGCu---UUaGCUGUUGUG---GCCG----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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