miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26684 5' -55.3 NC_005808.1 + 24821 1.08 0.000905
Target:  5'- uUCUAUCCGUUCGCGCGCGACUCGCUGc -3'
miRNA:   3'- -AGAUAGGCAAGCGCGCGCUGAGCGAC- -5'
26684 5' -55.3 NC_005808.1 + 16300 0.79 0.119571
Target:  5'- cCUGUCCGUugauggcauccaUCGCGCGCGAUgCGCg- -3'
miRNA:   3'- aGAUAGGCA------------AGCGCGCGCUGaGCGac -5'
26684 5' -55.3 NC_005808.1 + 11082 0.7 0.402103
Target:  5'- -gUGUCCGggUCGCGCGCGAgcacCUUgucgGCUGc -3'
miRNA:   3'- agAUAGGCa-AGCGCGCGCU----GAG----CGAC- -5'
26684 5' -55.3 NC_005808.1 + 15125 0.7 0.430707
Target:  5'- ---cUCgCGUggugCGUGCGCGGCgCGCUGg -3'
miRNA:   3'- agauAG-GCAa---GCGCGCGCUGaGCGAC- -5'
26684 5' -55.3 NC_005808.1 + 20064 0.7 0.430707
Target:  5'- ----aCCGgcaCGCGCGCGcugcgcguGCUCGCUGc -3'
miRNA:   3'- agauaGGCaa-GCGCGCGC--------UGAGCGAC- -5'
26684 5' -55.3 NC_005808.1 + 34984 0.68 0.544617
Target:  5'- -gUGUCCGg-CGCuGCGCGACcacgUGCUGu -3'
miRNA:   3'- agAUAGGCaaGCG-CGCGCUGa---GCGAC- -5'
26684 5' -55.3 NC_005808.1 + 22068 0.67 0.566489
Target:  5'- cUCggGUCgCGgUCgGCGCGCGGCUCGaUGg -3'
miRNA:   3'- -AGa-UAG-GCaAG-CGCGCGCUGAGCgAC- -5'
26684 5' -55.3 NC_005808.1 + 7606 0.67 0.581933
Target:  5'- gUCUGUCCGUcugcCGUggugauggucaggggGCGCGGCUCGa-- -3'
miRNA:   3'- -AGAUAGGCAa---GCG---------------CGCGCUGAGCgac -5'
26684 5' -55.3 NC_005808.1 + 41543 0.67 0.588579
Target:  5'- aCUGgacgCCgGUUCGCG-GCGACaUGCUGc -3'
miRNA:   3'- aGAUa---GG-CAAGCGCgCGCUGaGCGAC- -5'
26684 5' -55.3 NC_005808.1 + 1656 0.67 0.61082
Target:  5'- gUCUgcgcGUCCuGUUUGCGCGUGA--UGCUGc -3'
miRNA:   3'- -AGA----UAGG-CAAGCGCGCGCUgaGCGAC- -5'
26684 5' -55.3 NC_005808.1 + 24432 0.66 0.633137
Target:  5'- aUUUGUCgGUgcCGCGCGCGGcCUCGg-- -3'
miRNA:   3'- -AGAUAGgCAa-GCGCGCGCU-GAGCgac -5'
26684 5' -55.3 NC_005808.1 + 5617 0.66 0.644298
Target:  5'- --gGUgCGuUUCGCGCGUGgcgcggcgcaGCUUGCUGg -3'
miRNA:   3'- agaUAgGC-AAGCGCGCGC----------UGAGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.