Results 41 - 60 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26687 | 5' | -48.7 | NC_005808.1 | + | 11744 | 0.7 | 0.815141 |
Target: 5'- uUGUgCGAACUGAuCGGcgacagguugcagcgGAuuUGCCGGCa -3' miRNA: 3'- -ACAgGCUUGACU-GCU---------------UUuuGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 6538 | 0.7 | 0.811155 |
Target: 5'- aGUUCGAuGCUGGCGuu-GACGUagCAGCc -3' miRNA: 3'- aCAGGCU-UGACUGCuuuUUGCG--GUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 17270 | 0.7 | 0.811155 |
Target: 5'- gGcCUGGACaaucccGGCGAcGAGCGCCGGUg -3' miRNA: 3'- aCaGGCUUGa-----CUGCUuUUUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 28395 | 0.71 | 0.769569 |
Target: 5'- aGUUCGAcGCcGGCGGcgcGGCGCCAGUa -3' miRNA: 3'- aCAGGCU-UGaCUGCUuu-UUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 35321 | 0.71 | 0.725428 |
Target: 5'- aGUCCGAccACcGcCGAGAAGCugcacaagGCCGGCg -3' miRNA: 3'- aCAGGCU--UGaCuGCUUUUUG--------CGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 42408 | 0.72 | 0.714096 |
Target: 5'- aUG-CUGA--UGGCGggGauGACGCCGGCa -3' miRNA: 3'- -ACaGGCUugACUGCuuU--UUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 23827 | 0.72 | 0.691172 |
Target: 5'- --cUCGAcGCUGACGAuggaaGAAAuCGCCGGCa -3' miRNA: 3'- acaGGCU-UGACUGCU-----UUUU-GCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 18448 | 0.73 | 0.656337 |
Target: 5'- --aCCGAAaacgUGACGGucgcGGCGCCGGCg -3' miRNA: 3'- acaGGCUUg---ACUGCUuu--UUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 24490 | 0.73 | 0.632965 |
Target: 5'- cGUaCCGGACggcGCGAAGGcguccugguucGCGCCGGCu -3' miRNA: 3'- aCA-GGCUUGac-UGCUUUU-----------UGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 35414 | 0.73 | 0.621273 |
Target: 5'- cUGUCCcGGCUG-CGucAGGGCGUCAGCg -3' miRNA: 3'- -ACAGGcUUGACuGCu-UUUUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 31967 | 0.74 | 0.59793 |
Target: 5'- ---aCGAACUGgucACGGAAcgcgaacucGACGCCAGCg -3' miRNA: 3'- acagGCUUGAC---UGCUUU---------UUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 4838 | 0.74 | 0.586303 |
Target: 5'- cGUCguCGAAUUcACGGAAAGCGgCCAGCu -3' miRNA: 3'- aCAG--GCUUGAcUGCUUUUUGC-GGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 34809 | 0.74 | 0.574718 |
Target: 5'- cUG-CUGGGC-GGCGAAGggugGACGCCGGCg -3' miRNA: 3'- -ACaGGCUUGaCUGCUUU----UUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 14838 | 0.75 | 0.540323 |
Target: 5'- gUGUCCGAGCcgGACGAGGGcagcgaguuGCGCgAGg -3' miRNA: 3'- -ACAGGCUUGa-CUGCUUUU---------UGCGgUCg -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 15091 | 0.76 | 0.484703 |
Target: 5'- cG-CCGAgaaGCUGGCGGccGAGGcCGCCGGCa -3' miRNA: 3'- aCaGGCU---UGACUGCU--UUUU-GCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 13930 | 0.77 | 0.44225 |
Target: 5'- cG-CCGcGCUGGCGAGGc-CGCCGGCa -3' miRNA: 3'- aCaGGCuUGACUGCUUUuuGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 16929 | 0.77 | 0.44225 |
Target: 5'- -aUCCGccGGCUGAUGAcguacauGACGCCGGCa -3' miRNA: 3'- acAGGC--UUGACUGCUuu-----UUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 4687 | 0.78 | 0.392282 |
Target: 5'- cG-CCGGAUagcgcGGCGAGAAugGCCGGCa -3' miRNA: 3'- aCaGGCUUGa----CUGCUUUUugCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 34407 | 0.79 | 0.320371 |
Target: 5'- aUGUC---GCUGACGAAcgggcaGGACGCCAGCg -3' miRNA: 3'- -ACAGgcuUGACUGCUU------UUUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 23663 | 1.14 | 0.001681 |
Target: 5'- gUGUCCGAACUGACGAAAAACGCCAGCg -3' miRNA: 3'- -ACAGGCUUGACUGCUUUUUGCGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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