miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26687 5' -48.7 NC_005808.1 + 30407 0.67 0.919525
Target:  5'- cGUCCacGCuuucgcucggcaUGGCGAuGAGCGCgGGCa -3'
miRNA:   3'- aCAGGcuUG------------ACUGCUuUUUGCGgUCG- -5'
26687 5' -48.7 NC_005808.1 + 6656 0.67 0.919525
Target:  5'- gUGUCCGcGCUcAUGGucuGCGCCAcGCc -3'
miRNA:   3'- -ACAGGCuUGAcUGCUuuuUGCGGU-CG- -5'
26687 5' -48.7 NC_005808.1 + 34646 0.67 0.919525
Target:  5'- cG-CCGAggccacgggcaaGCUGuCGGAAAuccucGCGCCGGUg -3'
miRNA:   3'- aCaGGCU------------UGACuGCUUUU-----UGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 18084 0.67 0.912923
Target:  5'- --cCUGGACgUGAuCGGcguGGGCGCCAGCc -3'
miRNA:   3'- acaGGCUUG-ACU-GCUu--UUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 32841 0.67 0.912246
Target:  5'- -aUCUGGACUucgaGGCGAAGcGCGCCcaccacgAGCa -3'
miRNA:   3'- acAGGCUUGA----CUGCUUUuUGCGG-------UCG- -5'
26687 5' -48.7 NC_005808.1 + 9790 0.67 0.906012
Target:  5'- aGUCCGAccgGCaGACGcgcAGCaCCAGCg -3'
miRNA:   3'- aCAGGCU---UGaCUGCuuuUUGcGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 10264 0.68 0.898794
Target:  5'- --cCUGGGC-GGCGGuugucGGGACGCCGGCc -3'
miRNA:   3'- acaGGCUUGaCUGCU-----UUUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 22380 0.68 0.898794
Target:  5'- gUGUUCGAuUUGGCGAAAAuCaUCAGCa -3'
miRNA:   3'- -ACAGGCUuGACUGCUUUUuGcGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 164 0.68 0.891275
Target:  5'- gUGcCCaAGCUGccgcGCGcAGAAUGCCGGCg -3'
miRNA:   3'- -ACaGGcUUGAC----UGCuUUUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 36177 0.68 0.88662
Target:  5'- gUGUCgCGAGCgagGACGAGuucgacgacaucaccGAggGCGCCgcGGCg -3'
miRNA:   3'- -ACAG-GCUUGa--CUGCUU---------------UU--UGCGG--UCG- -5'
26687 5' -48.7 NC_005808.1 + 18017 0.68 0.883458
Target:  5'- cGUCCGAACcuuGCGGGuucuUGUCGGCg -3'
miRNA:   3'- aCAGGCUUGac-UGCUUuuu-GCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 6355 0.68 0.883458
Target:  5'- cGUCUGGG-UGGCGAAccggcccACGUCGGCa -3'
miRNA:   3'- aCAGGCUUgACUGCUUuu-----UGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 41618 0.68 0.87535
Target:  5'- ---gCGGGCUGACGGuGAAGgGCUGGCu -3'
miRNA:   3'- acagGCUUGACUGCU-UUUUgCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 18950 0.68 0.872027
Target:  5'- aGUUCGGACacgucacauUGGCGAugcggacgacguAACGCCAGUc -3'
miRNA:   3'- aCAGGCUUG---------ACUGCUuu----------UUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 14312 0.68 0.866959
Target:  5'- uUG-CUGAACUGGCGc---GCGCCuuGGCu -3'
miRNA:   3'- -ACaGGCUUGACUGCuuuuUGCGG--UCG- -5'
26687 5' -48.7 NC_005808.1 + 20170 0.69 0.852962
Target:  5'- aGUCCGccgccgucaaggcguGGCUGGCGA---ACGUCAcGCg -3'
miRNA:   3'- aCAGGC---------------UUGACUGCUuuuUGCGGU-CG- -5'
26687 5' -48.7 NC_005808.1 + 36053 0.69 0.849357
Target:  5'- ---gCGGGCUGcuACGuc-AACGCCAGCa -3'
miRNA:   3'- acagGCUUGAC--UGCuuuUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 38276 0.69 0.840166
Target:  5'- aGcCCGcAACUGGau---GACGCCGGCa -3'
miRNA:   3'- aCaGGC-UUGACUgcuuuUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 15393 0.69 0.840166
Target:  5'- cGUgCGGGCcGGCGAAG-AUGCCGGa -3'
miRNA:   3'- aCAgGCUUGaCUGCUUUuUGCGGUCg -5'
26687 5' -48.7 NC_005808.1 + 13229 0.7 0.821053
Target:  5'- aGUCCGAggGCUGGgGcAAGGCcaCCGGCg -3'
miRNA:   3'- aCAGGCU--UGACUgCuUUUUGc-GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.