miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26687 5' -48.7 NC_005808.1 + 15130 0.67 0.925815
Target:  5'- gGcCCGAccccauGCUGGCGGcgGAuGCGCCcagGGCg -3'
miRNA:   3'- aCaGGCU------UGACUGCU--UUuUGCGG---UCG- -5'
26687 5' -48.7 NC_005808.1 + 15393 0.69 0.840166
Target:  5'- cGUgCGGGCcGGCGAAG-AUGCCGGa -3'
miRNA:   3'- aCAgGCUUGaCUGCUUUuUGCGGUCg -5'
26687 5' -48.7 NC_005808.1 + 15724 0.66 0.93746
Target:  5'- --aUCGAACUGGCGc--GAgGCCAuGCg -3'
miRNA:   3'- acaGGCUUGACUGCuuuUUgCGGU-CG- -5'
26687 5' -48.7 NC_005808.1 + 16929 0.77 0.44225
Target:  5'- -aUCCGccGGCUGAUGAcguacauGACGCCGGCa -3'
miRNA:   3'- acAGGC--UUGACUGCUuu-----UUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 17270 0.7 0.811155
Target:  5'- gGcCUGGACaaucccGGCGAcGAGCGCCGGUg -3'
miRNA:   3'- aCaGGCUUGa-----CUGCUuUUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 18017 0.68 0.883458
Target:  5'- cGUCCGAACcuuGCGGGuucuUGUCGGCg -3'
miRNA:   3'- aCAGGCUUGac-UGCUUuuu-GCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 18084 0.67 0.912923
Target:  5'- --cCUGGACgUGAuCGGcguGGGCGCCAGCc -3'
miRNA:   3'- acaGGCUUG-ACU-GCUu--UUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 18448 0.73 0.656337
Target:  5'- --aCCGAAaacgUGACGGucgcGGCGCCGGCg -3'
miRNA:   3'- acaGGCUUg---ACUGCUuu--UUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 18950 0.68 0.872027
Target:  5'- aGUUCGGACacgucacauUGGCGAugcggacgacguAACGCCAGUc -3'
miRNA:   3'- aCAGGCUUG---------ACUGCUuu----------UUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 19628 0.67 0.925815
Target:  5'- -aUCCGAccgGCUGACGcAGGAAUaCCAGa -3'
miRNA:   3'- acAGGCU---UGACUGC-UUUUUGcGGUCg -5'
26687 5' -48.7 NC_005808.1 + 20083 0.66 0.957054
Target:  5'- aUGUCCaguuccUUGGCGAcuucggaaAAGGCGcCCAGCa -3'
miRNA:   3'- -ACAGGcuu---GACUGCU--------UUUUGC-GGUCG- -5'
26687 5' -48.7 NC_005808.1 + 20170 0.69 0.852962
Target:  5'- aGUCCGccgccgucaaggcguGGCUGGCGA---ACGUCAcGCg -3'
miRNA:   3'- aCAGGC---------------UUGACUGCUuuuUGCGGU-CG- -5'
26687 5' -48.7 NC_005808.1 + 20414 0.67 0.931793
Target:  5'- aGUUCagggcaGAGCgUGugGAuuuGCGCCAGUa -3'
miRNA:   3'- aCAGG------CUUG-ACugCUuuuUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 22380 0.68 0.898794
Target:  5'- gUGUUCGAuUUGGCGAAAAuCaUCAGCa -3'
miRNA:   3'- -ACAGGCUuGACUGCUUUUuGcGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 22812 0.66 0.946879
Target:  5'- gGUgCCGGACUGGCccgacuuCGCCGcGCu -3'
miRNA:   3'- aCA-GGCUUGACUGcuuuuu-GCGGU-CG- -5'
26687 5' -48.7 NC_005808.1 + 23578 0.67 0.925815
Target:  5'- gGUgCGGGCggggGGCGAcGAugGCCGucauGCg -3'
miRNA:   3'- aCAgGCUUGa---CUGCUuUUugCGGU----CG- -5'
26687 5' -48.7 NC_005808.1 + 23663 1.14 0.001681
Target:  5'- gUGUCCGAACUGACGAAAAACGCCAGCg -3'
miRNA:   3'- -ACAGGCUUGACUGCUUUUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 23827 0.72 0.691172
Target:  5'- --cUCGAcGCUGACGAuggaaGAAAuCGCCGGCa -3'
miRNA:   3'- acaGGCU-UGACUGCU-----UUUU-GCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 23990 0.67 0.93121
Target:  5'- -aUUCGGcgcacagACUGGCGAAGGugggcGCGUCGGCc -3'
miRNA:   3'- acAGGCU-------UGACUGCUUUU-----UGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 24490 0.73 0.632965
Target:  5'- cGUaCCGGACggcGCGAAGGcguccugguucGCGCCGGCu -3'
miRNA:   3'- aCA-GGCUUGac-UGCUUUU-----------UGCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.