Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26687 | 5' | -48.7 | NC_005808.1 | + | 42408 | 0.72 | 0.714096 |
Target: 5'- aUG-CUGA--UGGCGggGauGACGCCGGCa -3' miRNA: 3'- -ACaGGCUugACUGCuuU--UUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 35321 | 0.71 | 0.725428 |
Target: 5'- aGUCCGAccACcGcCGAGAAGCugcacaagGCCGGCg -3' miRNA: 3'- aCAGGCU--UGaCuGCUUUUUG--------CGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 28395 | 0.71 | 0.769569 |
Target: 5'- aGUUCGAcGCcGGCGGcgcGGCGCCAGUa -3' miRNA: 3'- aCAGGCU-UGaCUGCUuu-UUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 11744 | 0.7 | 0.815141 |
Target: 5'- uUGUgCGAACUGAuCGGcgacagguugcagcgGAuuUGCCGGCa -3' miRNA: 3'- -ACAgGCUUGACU-GCU---------------UUuuGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 41618 | 0.68 | 0.87535 |
Target: 5'- ---gCGGGCUGACGGuGAAGgGCUGGCu -3' miRNA: 3'- acagGCUUGACUGCU-UUUUgCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 18950 | 0.68 | 0.872027 |
Target: 5'- aGUUCGGACacgucacauUGGCGAugcggacgacguAACGCCAGUc -3' miRNA: 3'- aCAGGCUUG---------ACUGCUuu----------UUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 14312 | 0.68 | 0.866959 |
Target: 5'- uUG-CUGAACUGGCGc---GCGCCuuGGCu -3' miRNA: 3'- -ACaGGCUUGACUGCuuuuUGCGG--UCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 36053 | 0.69 | 0.849357 |
Target: 5'- ---gCGGGCUGcuACGuc-AACGCCAGCa -3' miRNA: 3'- acagGCUUGAC--UGCuuuUUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 38276 | 0.69 | 0.840166 |
Target: 5'- aGcCCGcAACUGGau---GACGCCGGCa -3' miRNA: 3'- aCaGGC-UUGACUgcuuuUUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 15393 | 0.69 | 0.840166 |
Target: 5'- cGUgCGGGCcGGCGAAG-AUGCCGGa -3' miRNA: 3'- aCAgGCUUGaCUGCUUUuUGCGGUCg -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 23827 | 0.72 | 0.691172 |
Target: 5'- --cUCGAcGCUGACGAuggaaGAAAuCGCCGGCa -3' miRNA: 3'- acaGGCU-UGACUGCU-----UUUU-GCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 24490 | 0.73 | 0.632965 |
Target: 5'- cGUaCCGGACggcGCGAAGGcguccugguucGCGCCGGCu -3' miRNA: 3'- aCA-GGCUUGac-UGCUUUU-----------UGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 35414 | 0.73 | 0.621273 |
Target: 5'- cUGUCCcGGCUG-CGucAGGGCGUCAGCg -3' miRNA: 3'- -ACAGGcUUGACuGCu-UUUUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 4838 | 0.74 | 0.586303 |
Target: 5'- cGUCguCGAAUUcACGGAAAGCGgCCAGCu -3' miRNA: 3'- aCAG--GCUUGAcUGCUUUUUGC-GGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 34809 | 0.74 | 0.574718 |
Target: 5'- cUG-CUGGGC-GGCGAAGggugGACGCCGGCg -3' miRNA: 3'- -ACaGGCUUGaCUGCUUU----UUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 14838 | 0.75 | 0.540323 |
Target: 5'- gUGUCCGAGCcgGACGAGGGcagcgaguuGCGCgAGg -3' miRNA: 3'- -ACAGGCUUGa-CUGCUUUU---------UGCGgUCg -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 15091 | 0.76 | 0.484703 |
Target: 5'- cG-CCGAgaaGCUGGCGGccGAGGcCGCCGGCa -3' miRNA: 3'- aCaGGCU---UGACUGCU--UUUU-GCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 16929 | 0.77 | 0.44225 |
Target: 5'- -aUCCGccGGCUGAUGAcguacauGACGCCGGCa -3' miRNA: 3'- acAGGC--UUGACUGCUuu-----UUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 13930 | 0.77 | 0.44225 |
Target: 5'- cG-CCGcGCUGGCGAGGc-CGCCGGCa -3' miRNA: 3'- aCaGGCuUGACUGCUUUuuGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 27260 | 0.66 | 0.957054 |
Target: 5'- cGUCCGAACccuACGGcucacCGCCuGCa -3' miRNA: 3'- aCAGGCUUGac-UGCUuuuu-GCGGuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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