Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26687 | 5' | -48.7 | NC_005808.1 | + | 15130 | 0.67 | 0.925815 |
Target: 5'- gGcCCGAccccauGCUGGCGGcgGAuGCGCCcagGGCg -3' miRNA: 3'- aCaGGCU------UGACUGCU--UUuUGCGG---UCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 18950 | 0.68 | 0.872027 |
Target: 5'- aGUUCGGACacgucacauUGGCGAugcggacgacguAACGCCAGUc -3' miRNA: 3'- aCAGGCUUG---------ACUGCUuu----------UUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 41618 | 0.68 | 0.87535 |
Target: 5'- ---gCGGGCUGACGGuGAAGgGCUGGCu -3' miRNA: 3'- acagGCUUGACUGCU-UUUUgCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 6355 | 0.68 | 0.883458 |
Target: 5'- cGUCUGGG-UGGCGAAccggcccACGUCGGCa -3' miRNA: 3'- aCAGGCUUgACUGCUUuu-----UGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 18017 | 0.68 | 0.883458 |
Target: 5'- cGUCCGAACcuuGCGGGuucuUGUCGGCg -3' miRNA: 3'- aCAGGCUUGac-UGCUUuuu-GCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 36177 | 0.68 | 0.88662 |
Target: 5'- gUGUCgCGAGCgagGACGAGuucgacgacaucaccGAggGCGCCgcGGCg -3' miRNA: 3'- -ACAG-GCUUGa--CUGCUU---------------UU--UGCGG--UCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 22380 | 0.68 | 0.898794 |
Target: 5'- gUGUUCGAuUUGGCGAAAAuCaUCAGCa -3' miRNA: 3'- -ACAGGCUuGACUGCUUUUuGcGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 6656 | 0.67 | 0.919525 |
Target: 5'- gUGUCCGcGCUcAUGGucuGCGCCAcGCc -3' miRNA: 3'- -ACAGGCuUGAcUGCUuuuUGCGGU-CG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 30407 | 0.67 | 0.919525 |
Target: 5'- cGUCCacGCuuucgcucggcaUGGCGAuGAGCGCgGGCa -3' miRNA: 3'- aCAGGcuUG------------ACUGCUuUUUGCGgUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 14312 | 0.68 | 0.866959 |
Target: 5'- uUG-CUGAACUGGCGc---GCGCCuuGGCu -3' miRNA: 3'- -ACaGGCUUGACUGCuuuuUGCGG--UCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 36053 | 0.69 | 0.849357 |
Target: 5'- ---gCGGGCUGcuACGuc-AACGCCAGCa -3' miRNA: 3'- acagGCUUGAC--UGCuuuUUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 38276 | 0.69 | 0.840166 |
Target: 5'- aGcCCGcAACUGGau---GACGCCGGCa -3' miRNA: 3'- aCaGGC-UUGACUgcuuuUUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 4687 | 0.78 | 0.392282 |
Target: 5'- cG-CCGGAUagcgcGGCGAGAAugGCCGGCa -3' miRNA: 3'- aCaGGCUUGa----CUGCUUUUugCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 31967 | 0.74 | 0.59793 |
Target: 5'- ---aCGAACUGgucACGGAAcgcgaacucGACGCCAGCg -3' miRNA: 3'- acagGCUUGAC---UGCUUU---------UUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 18448 | 0.73 | 0.656337 |
Target: 5'- --aCCGAAaacgUGACGGucgcGGCGCCGGCg -3' miRNA: 3'- acaGGCUUg---ACUGCUuu--UUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 42408 | 0.72 | 0.714096 |
Target: 5'- aUG-CUGA--UGGCGggGauGACGCCGGCa -3' miRNA: 3'- -ACaGGCUugACUGCuuU--UUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 35321 | 0.71 | 0.725428 |
Target: 5'- aGUCCGAccACcGcCGAGAAGCugcacaagGCCGGCg -3' miRNA: 3'- aCAGGCU--UGaCuGCUUUUUG--------CGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 28395 | 0.71 | 0.769569 |
Target: 5'- aGUUCGAcGCcGGCGGcgcGGCGCCAGUa -3' miRNA: 3'- aCAGGCU-UGaCUGCUuu-UUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 11744 | 0.7 | 0.815141 |
Target: 5'- uUGUgCGAACUGAuCGGcgacagguugcagcgGAuuUGCCGGCa -3' miRNA: 3'- -ACAgGCUUGACU-GCU---------------UUuuGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 15393 | 0.69 | 0.840166 |
Target: 5'- cGUgCGGGCcGGCGAAG-AUGCCGGa -3' miRNA: 3'- aCAgGCUUGaCUGCUUUuUGCGGUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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