miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26687 5' -48.7 NC_005808.1 + 23663 1.14 0.001681
Target:  5'- gUGUCCGAACUGACGAAAAACGCCAGCg -3'
miRNA:   3'- -ACAGGCUUGACUGCUUUUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 32841 0.67 0.912246
Target:  5'- -aUCUGGACUucgaGGCGAAGcGCGCCcaccacgAGCa -3'
miRNA:   3'- acAGGCUUGA----CUGCUUUuUGCGG-------UCG- -5'
26687 5' -48.7 NC_005808.1 + 34646 0.67 0.919525
Target:  5'- cG-CCGAggccacgggcaaGCUGuCGGAAAuccucGCGCCGGUg -3'
miRNA:   3'- aCaGGCU------------UGACuGCUUUU-----UGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 27260 0.66 0.957054
Target:  5'- cGUCCGAACccuACGGcucacCGCCuGCa -3'
miRNA:   3'- aCAGGCUUGac-UGCUuuuu-GCGGuCG- -5'
26687 5' -48.7 NC_005808.1 + 14838 0.75 0.540323
Target:  5'- gUGUCCGAGCcgGACGAGGGcagcgaguuGCGCgAGg -3'
miRNA:   3'- -ACAGGCUUGa-CUGCUUUU---------UGCGgUCg -5'
26687 5' -48.7 NC_005808.1 + 34809 0.74 0.574718
Target:  5'- cUG-CUGGGC-GGCGAAGggugGACGCCGGCg -3'
miRNA:   3'- -ACaGGCUUGaCUGCUUU----UUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 35414 0.73 0.621273
Target:  5'- cUGUCCcGGCUG-CGucAGGGCGUCAGCg -3'
miRNA:   3'- -ACAGGcUUGACuGCu-UUUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 24490 0.73 0.632965
Target:  5'- cGUaCCGGACggcGCGAAGGcguccugguucGCGCCGGCu -3'
miRNA:   3'- aCA-GGCUUGac-UGCUUUU-----------UGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 17270 0.7 0.811155
Target:  5'- gGcCUGGACaaucccGGCGAcGAGCGCCGGUg -3'
miRNA:   3'- aCaGGCUUGa-----CUGCUuUUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 9790 0.67 0.906012
Target:  5'- aGUCCGAccgGCaGACGcgcAGCaCCAGCg -3'
miRNA:   3'- aCAGGCU---UGaCUGCuuuUUGcGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 20170 0.69 0.852962
Target:  5'- aGUCCGccgccgucaaggcguGGCUGGCGA---ACGUCAcGCg -3'
miRNA:   3'- aCAGGC---------------UUGACUGCUuuuUGCGGU-CG- -5'
26687 5' -48.7 NC_005808.1 + 6538 0.7 0.811155
Target:  5'- aGUUCGAuGCUGGCGuu-GACGUagCAGCc -3'
miRNA:   3'- aCAGGCU-UGACUGCuuuUUGCG--GUCG- -5'
26687 5' -48.7 NC_005808.1 + 13930 0.77 0.44225
Target:  5'- cG-CCGcGCUGGCGAGGc-CGCCGGCa -3'
miRNA:   3'- aCaGGCuUGACUGCUUUuuGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 164 0.68 0.891275
Target:  5'- gUGcCCaAGCUGccgcGCGcAGAAUGCCGGCg -3'
miRNA:   3'- -ACaGGcUUGAC----UGCuUUUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 16929 0.77 0.44225
Target:  5'- -aUCCGccGGCUGAUGAcguacauGACGCCGGCa -3'
miRNA:   3'- acAGGC--UUGACUGCUuu-----UUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 23827 0.72 0.691172
Target:  5'- --cUCGAcGCUGACGAuggaaGAAAuCGCCGGCa -3'
miRNA:   3'- acaGGCU-UGACUGCU-----UUUU-GCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 10264 0.68 0.898794
Target:  5'- --cCUGGGC-GGCGGuugucGGGACGCCGGCc -3'
miRNA:   3'- acaGGCUUGaCUGCU-----UUUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 18084 0.67 0.912923
Target:  5'- --cCUGGACgUGAuCGGcguGGGCGCCAGCc -3'
miRNA:   3'- acaGGCUUG-ACU-GCUu--UUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 15091 0.76 0.484703
Target:  5'- cG-CCGAgaaGCUGGCGGccGAGGcCGCCGGCa -3'
miRNA:   3'- aCaGGCU---UGACUGCU--UUUU-GCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 4838 0.74 0.586303
Target:  5'- cGUCguCGAAUUcACGGAAAGCGgCCAGCu -3'
miRNA:   3'- aCAG--GCUUGAcUGCUUUUUGC-GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.