Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26687 | 5' | -48.7 | NC_005808.1 | + | 130 | 0.66 | 0.957054 |
Target: 5'- uUGUCCcaAGCUacGGCGu--GGCGCCAGg -3' miRNA: 3'- -ACAGGc-UUGA--CUGCuuuUUGCGGUCg -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 164 | 0.68 | 0.891275 |
Target: 5'- gUGcCCaAGCUGccgcGCGcAGAAUGCCGGCg -3' miRNA: 3'- -ACaGGcUUGAC----UGCuUUUUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 329 | 0.66 | 0.942816 |
Target: 5'- cGUCa-GGCUGGCGGuggcguCGCgCAGCa -3' miRNA: 3'- aCAGgcUUGACUGCUuuuu--GCG-GUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 2195 | 0.66 | 0.957054 |
Target: 5'- --aCCGcAUuccagGGCGAGAAACGCCucGCg -3' miRNA: 3'- acaGGCuUGa----CUGCUUUUUGCGGu-CG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 4687 | 0.78 | 0.392282 |
Target: 5'- cG-CCGGAUagcgcGGCGAGAAugGCCGGCa -3' miRNA: 3'- aCaGGCUUGa----CUGCUUUUugCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 4838 | 0.74 | 0.586303 |
Target: 5'- cGUCguCGAAUUcACGGAAAGCGgCCAGCu -3' miRNA: 3'- aCAG--GCUUGAcUGCUUUUUGC-GGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 6355 | 0.68 | 0.883458 |
Target: 5'- cGUCUGGG-UGGCGAAccggcccACGUCGGCa -3' miRNA: 3'- aCAGGCUUgACUGCUUuu-----UGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 6538 | 0.7 | 0.811155 |
Target: 5'- aGUUCGAuGCUGGCGuu-GACGUagCAGCc -3' miRNA: 3'- aCAGGCU-UGACUGCuuuUUGCG--GUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 6656 | 0.67 | 0.919525 |
Target: 5'- gUGUCCGcGCUcAUGGucuGCGCCAcGCc -3' miRNA: 3'- -ACAGGCuUGAcUGCUuuuUGCGGU-CG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 7889 | 0.66 | 0.93746 |
Target: 5'- cGUCCaGGGC-GGCGcgugcguAGAuCGCCAGCu -3' miRNA: 3'- aCAGG-CUUGaCUGCu------UUUuGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 9790 | 0.67 | 0.906012 |
Target: 5'- aGUCCGAccgGCaGACGcgcAGCaCCAGCg -3' miRNA: 3'- aCAGGCU---UGaCUGCuuuUUGcGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 10264 | 0.68 | 0.898794 |
Target: 5'- --cCUGGGC-GGCGGuugucGGGACGCCGGCc -3' miRNA: 3'- acaGGCUUGaCUGCU-----UUUUGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 11744 | 0.7 | 0.815141 |
Target: 5'- uUGUgCGAACUGAuCGGcgacagguugcagcgGAuuUGCCGGCa -3' miRNA: 3'- -ACAgGCUUGACU-GCU---------------UUuuGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 13229 | 0.7 | 0.821053 |
Target: 5'- aGUCCGAggGCUGGgGcAAGGCcaCCGGCg -3' miRNA: 3'- aCAGGCU--UGACUgCuUUUUGc-GGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 13364 | 0.67 | 0.931793 |
Target: 5'- aGUggaCGGACUucuucGGCGGAcuGGACGCCAuGCg -3' miRNA: 3'- aCAg--GCUUGA-----CUGCUU--UUUGCGGU-CG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 13772 | 0.66 | 0.942816 |
Target: 5'- aGUCCGGccGCaacccGACGAcggcGCGCUGGCu -3' miRNA: 3'- aCAGGCU--UGa----CUGCUuuu-UGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 13930 | 0.77 | 0.44225 |
Target: 5'- cG-CCGcGCUGGCGAGGc-CGCCGGCa -3' miRNA: 3'- aCaGGCuUGACUGCUUUuuGCGGUCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 14312 | 0.68 | 0.866959 |
Target: 5'- uUG-CUGAACUGGCGc---GCGCCuuGGCu -3' miRNA: 3'- -ACaGGCUUGACUGCuuuuUGCGG--UCG- -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 14838 | 0.75 | 0.540323 |
Target: 5'- gUGUCCGAGCcgGACGAGGGcagcgaguuGCGCgAGg -3' miRNA: 3'- -ACAGGCUUGa-CUGCUUUU---------UGCGgUCg -5' |
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26687 | 5' | -48.7 | NC_005808.1 | + | 15091 | 0.76 | 0.484703 |
Target: 5'- cG-CCGAgaaGCUGGCGGccGAGGcCGCCGGCa -3' miRNA: 3'- aCaGGCU---UGACUGCU--UUUU-GCGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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