miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26687 5' -48.7 NC_005808.1 + 42408 0.72 0.714096
Target:  5'- aUG-CUGA--UGGCGggGauGACGCCGGCa -3'
miRNA:   3'- -ACaGGCUugACUGCuuU--UUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 41618 0.68 0.87535
Target:  5'- ---gCGGGCUGACGGuGAAGgGCUGGCu -3'
miRNA:   3'- acagGCUUGACUGCU-UUUUgCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 41106 0.66 0.947864
Target:  5'- aUGUCCGAccagcACUG-CGAu--ACcCCGGCc -3'
miRNA:   3'- -ACAGGCU-----UGACuGCUuuuUGcGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 38576 0.67 0.925815
Target:  5'- --cCCGcgcGGCaUGACGcuGGugGCCGGCg -3'
miRNA:   3'- acaGGC---UUG-ACUGCuuUUugCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 38276 0.69 0.840166
Target:  5'- aGcCCGcAACUGGau---GACGCCGGCa -3'
miRNA:   3'- aCaGGC-UUGACUgcuuuUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 37956 0.66 0.952609
Target:  5'- cUGUCCGAucUUGcCGAcccuGCGgCAGCg -3'
miRNA:   3'- -ACAGGCUu-GACuGCUuuu-UGCgGUCG- -5'
26687 5' -48.7 NC_005808.1 + 37767 0.67 0.931793
Target:  5'- -uUCCguGAAUUcGACGAc-GGCGCCGGCc -3'
miRNA:   3'- acAGG--CUUGA-CUGCUuuUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 36177 0.68 0.88662
Target:  5'- gUGUCgCGAGCgagGACGAGuucgacgacaucaccGAggGCGCCgcGGCg -3'
miRNA:   3'- -ACAG-GCUUGa--CUGCUU---------------UU--UGCGG--UCG- -5'
26687 5' -48.7 NC_005808.1 + 36053 0.69 0.849357
Target:  5'- ---gCGGGCUGcuACGuc-AACGCCAGCa -3'
miRNA:   3'- acagGCUUGAC--UGCuuuUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 35414 0.73 0.621273
Target:  5'- cUGUCCcGGCUG-CGucAGGGCGUCAGCg -3'
miRNA:   3'- -ACAGGcUUGACuGCu-UUUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 35321 0.71 0.725428
Target:  5'- aGUCCGAccACcGcCGAGAAGCugcacaagGCCGGCg -3'
miRNA:   3'- aCAGGCU--UGaCuGCUUUUUG--------CGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 34809 0.74 0.574718
Target:  5'- cUG-CUGGGC-GGCGAAGggugGACGCCGGCg -3'
miRNA:   3'- -ACaGGCUUGaCUGCUUU----UUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 34646 0.67 0.919525
Target:  5'- cG-CCGAggccacgggcaaGCUGuCGGAAAuccucGCGCCGGUg -3'
miRNA:   3'- aCaGGCU------------UGACuGCUUUU-----UGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 34407 0.79 0.320371
Target:  5'- aUGUC---GCUGACGAAcgggcaGGACGCCAGCg -3'
miRNA:   3'- -ACAGgcuUGACUGCUU------UUUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 32841 0.67 0.912246
Target:  5'- -aUCUGGACUucgaGGCGAAGcGCGCCcaccacgAGCa -3'
miRNA:   3'- acAGGCUUGA----CUGCUUUuUGCGG-------UCG- -5'
26687 5' -48.7 NC_005808.1 + 31967 0.74 0.59793
Target:  5'- ---aCGAACUGgucACGGAAcgcgaacucGACGCCAGCg -3'
miRNA:   3'- acagGCUUGAC---UGCUUU---------UUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 30407 0.67 0.919525
Target:  5'- cGUCCacGCuuucgcucggcaUGGCGAuGAGCGCgGGCa -3'
miRNA:   3'- aCAGGcuUG------------ACUGCUuUUUGCGgUCG- -5'
26687 5' -48.7 NC_005808.1 + 28395 0.71 0.769569
Target:  5'- aGUUCGAcGCcGGCGGcgcGGCGCCAGUa -3'
miRNA:   3'- aCAGGCU-UGaCUGCUuu-UUGCGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 27992 0.66 0.957054
Target:  5'- aUGgaagCCGAcgcACUGcUGAAAAGCggaucggccGCCGGCa -3'
miRNA:   3'- -ACa---GGCU---UGACuGCUUUUUG---------CGGUCG- -5'
26687 5' -48.7 NC_005808.1 + 27260 0.66 0.957054
Target:  5'- cGUCCGAACccuACGGcucacCGCCuGCa -3'
miRNA:   3'- aCAGGCUUGac-UGCUuuuu-GCGGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.