Results 1 - 20 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26689 | 3' | -46 | NC_005808.1 | + | 23034 | 1.11 | 0.00633 |
Target: 5'- uGAACGAAACCAACGAAAUCCUCGACGa -3' miRNA: 3'- -CUUGCUUUGGUUGCUUUAGGAGCUGC- -5' |
|||||||
26689 | 3' | -46 | NC_005808.1 | + | 21079 | 0.89 | 0.142886 |
Target: 5'- uGAACGGAugCAcaACGAAAUCCUCGACc -3' miRNA: 3'- -CUUGCUUugGU--UGCUUUAGGAGCUGc -5' |
|||||||
26689 | 3' | -46 | NC_005808.1 | + | 17083 | 0.82 | 0.360125 |
Target: 5'- aGGCGAAGCCGGCGcgGUUCUCGGCc -3' miRNA: 3'- cUUGCUUUGGUUGCuuUAGGAGCUGc -5' |
|||||||
26689 | 3' | -46 | NC_005808.1 | + | 28910 | 0.78 | 0.561111 |
Target: 5'- aGAugGAcGCCGACGAcAUCCUC-ACGg -3' miRNA: 3'- -CUugCUuUGGUUGCUuUAGGAGcUGC- -5' |
|||||||
26689 | 3' | -46 | NC_005808.1 | + | 35576 | 0.74 | 0.75928 |
Target: 5'- -cGCGAGAUCAACGccAAGUCCUCGuucaugGCGa -3' miRNA: 3'- cuUGCUUUGGUUGC--UUUAGGAGC------UGC- -5' |
|||||||
26689 | 3' | -46 | NC_005808.1 | + | 12255 | 0.73 | 0.841634 |
Target: 5'- cGAACG-GAUCGGCGGuaguGUCCUgGGCGg -3' miRNA: 3'- -CUUGCuUUGGUUGCUu---UAGGAgCUGC- -5' |
|||||||
26689 | 3' | -46 | NC_005808.1 | + | 18232 | 0.72 | 0.868647 |
Target: 5'- uGGCGAAugC-GCGAAGcCCUCGACc -3' miRNA: 3'- cUUGCUUugGuUGCUUUaGGAGCUGc -5' |
|||||||
26689 | 3' | -46 | NC_005808.1 | + | 24770 | 0.71 | 0.893101 |
Target: 5'- gGAAUGAccuGCC-ACGGGucGUCCUCGAUGc -3' miRNA: 3'- -CUUGCUu--UGGuUGCUU--UAGGAGCUGC- -5' |
|||||||
26689 | 3' | -46 | NC_005808.1 | + | 38481 | 0.71 | 0.900648 |
Target: 5'- --cCGAAGCCGACGA---CCgCGACGa -3' miRNA: 3'- cuuGCUUUGGUUGCUuuaGGaGCUGC- -5' |
|||||||
26689 | 3' | -46 | NC_005808.1 | + | 26010 | 0.7 | 0.927683 |
Target: 5'- uGGCGAuuUCGAgGGcuUCCUCGGCGa -3' miRNA: 3'- cUUGCUuuGGUUgCUuuAGGAGCUGC- -5' |
|||||||
26689 | 3' | -46 | NC_005808.1 | + | 40584 | 0.7 | 0.933644 |
Target: 5'- -cGCGAcuucGCCAGCGAGcgCCUgGGCc -3' miRNA: 3'- cuUGCUu---UGGUUGCUUuaGGAgCUGc -5' |
|||||||
26689 | 3' | -46 | NC_005808.1 | + | 29333 | 0.7 | 0.933644 |
Target: 5'- uGGCGGucGCCGGCcAAGUCCUCGAa- -3' miRNA: 3'- cUUGCUu-UGGUUGcUUUAGGAGCUgc -5' |
|||||||
26689 | 3' | -46 | NC_005808.1 | + | 14554 | 0.7 | 0.939283 |
Target: 5'- aGAcCGucGCCGACGuguUCUUCGGCGa -3' miRNA: 3'- -CUuGCuuUGGUUGCuuuAGGAGCUGC- -5' |
|||||||
26689 | 3' | -46 | NC_005808.1 | + | 31984 | 0.69 | 0.949613 |
Target: 5'- -cGCGAAcucgacGCCAgcguccuguGCGAAAcCCUCGACa -3' miRNA: 3'- cuUGCUU------UGGU---------UGCUUUaGGAGCUGc -5' |
|||||||
26689 | 3' | -46 | NC_005808.1 | + | 22146 | 0.69 | 0.954309 |
Target: 5'- cGAAgGGAACCGgaACGAGggCCUgCGGCu -3' miRNA: 3'- -CUUgCUUUGGU--UGCUUuaGGA-GCUGc -5' |
|||||||
26689 | 3' | -46 | NC_005808.1 | + | 30044 | 0.69 | 0.954309 |
Target: 5'- -cGCGAGGCCGGCaaGAAAUUCacCGACGc -3' miRNA: 3'- cuUGCUUUGGUUG--CUUUAGGa-GCUGC- -5' |
|||||||
26689 | 3' | -46 | NC_005808.1 | + | 1718 | 0.69 | 0.9587 |
Target: 5'- cGGCGu-GCCGGCGAgggcguccaAGUCCUCG-CGg -3' miRNA: 3'- cUUGCuuUGGUUGCU---------UUAGGAGCuGC- -5' |
|||||||
26689 | 3' | -46 | NC_005808.1 | + | 37070 | 0.69 | 0.962793 |
Target: 5'- uGGGCGGAaccugggcgGCCGGCGu-GUCCUaCGACu -3' miRNA: 3'- -CUUGCUU---------UGGUUGCuuUAGGA-GCUGc -5' |
|||||||
26689 | 3' | -46 | NC_005808.1 | + | 34351 | 0.69 | 0.962793 |
Target: 5'- cGGAUGAuuCCAGCGAcuUCgC-CGACGa -3' miRNA: 3'- -CUUGCUuuGGUUGCUuuAG-GaGCUGC- -5' |
|||||||
26689 | 3' | -46 | NC_005808.1 | + | 32774 | 0.69 | 0.962793 |
Target: 5'- ---aGAAGgCGGCGAAGUCCgcccUCGGCa -3' miRNA: 3'- cuugCUUUgGUUGCUUUAGG----AGCUGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home