miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26689 3' -46 NC_005808.1 + 17083 0.82 0.360125
Target:  5'- aGGCGAAGCCGGCGcgGUUCUCGGCc -3'
miRNA:   3'- cUUGCUUUGGUUGCuuUAGGAGCUGc -5'
26689 3' -46 NC_005808.1 + 34417 0.67 0.983819
Target:  5'- cGAACGGGcaggacGCCAGCGccuUCCUgGGCc -3'
miRNA:   3'- -CUUGCUU------UGGUUGCuuuAGGAgCUGc -5'
26689 3' -46 NC_005808.1 + 19055 0.67 0.985863
Target:  5'- cGGCGGcgucGAUCAGCGu-GUCCUCGcCGa -3'
miRNA:   3'- cUUGCU----UUGGUUGCuuUAGGAGCuGC- -5'
26689 3' -46 NC_005808.1 + 9728 0.67 0.987703
Target:  5'- --uCGAAGCCGcggGCGAAcUgCUCGugGu -3'
miRNA:   3'- cuuGCUUUGGU---UGCUUuAgGAGCugC- -5'
26689 3' -46 NC_005808.1 + 35083 0.66 0.989353
Target:  5'- -cACGGuagaCAACGccAUCCUCGGCa -3'
miRNA:   3'- cuUGCUuug-GUUGCuuUAGGAGCUGc -5'
26689 3' -46 NC_005808.1 + 3392 0.66 0.990824
Target:  5'- cGAugGGuuCCAuCGGuugCCUUGGCGg -3'
miRNA:   3'- -CUugCUuuGGUuGCUuuaGGAGCUGC- -5'
26689 3' -46 NC_005808.1 + 29397 0.66 0.992131
Target:  5'- -cGCGGuaGGCCAGCaGAAUCUUgGGCGc -3'
miRNA:   3'- cuUGCU--UUGGUUGcUUUAGGAgCUGC- -5'
26689 3' -46 NC_005808.1 + 41918 0.66 0.993285
Target:  5'- aAACccAGCCAGCGAGGUaCCgCGGCa -3'
miRNA:   3'- cUUGcuUUGGUUGCUUUA-GGaGCUGc -5'
26689 3' -46 NC_005808.1 + 33772 0.66 0.993285
Target:  5'- aGGACGGuaucaaGGCCGACaccAAGUaccgCCUCGACGa -3'
miRNA:   3'- -CUUGCU------UUGGUUGc--UUUA----GGAGCUGC- -5'
26689 3' -46 NC_005808.1 + 4742 0.67 0.981321
Target:  5'- -cGCGAuguucucGGCCAcggccGCGAuGUUCUCGGCGu -3'
miRNA:   3'- cuUGCU-------UUGGU-----UGCUuUAGGAGCUGC- -5'
26689 3' -46 NC_005808.1 + 27492 0.68 0.97634
Target:  5'- -cGCGAGgauGCCGGCGg---CCUCGGCc -3'
miRNA:   3'- cuUGCUU---UGGUUGCuuuaGGAGCUGc -5'
26689 3' -46 NC_005808.1 + 32774 0.69 0.962793
Target:  5'- ---aGAAGgCGGCGAAGUCCgcccUCGGCa -3'
miRNA:   3'- cuugCUUUgGUUGCUUUAGG----AGCUGc -5'
26689 3' -46 NC_005808.1 + 12255 0.73 0.841634
Target:  5'- cGAACG-GAUCGGCGGuaguGUCCUgGGCGg -3'
miRNA:   3'- -CUUGCuUUGGUUGCUu---UAGGAgCUGC- -5'
26689 3' -46 NC_005808.1 + 24770 0.71 0.893101
Target:  5'- gGAAUGAccuGCC-ACGGGucGUCCUCGAUGc -3'
miRNA:   3'- -CUUGCUu--UGGuUGCUU--UAGGAGCUGC- -5'
26689 3' -46 NC_005808.1 + 38481 0.71 0.900648
Target:  5'- --cCGAAGCCGACGA---CCgCGACGa -3'
miRNA:   3'- cuuGCUUUGGUUGCUuuaGGaGCUGC- -5'
26689 3' -46 NC_005808.1 + 26010 0.7 0.927683
Target:  5'- uGGCGAuuUCGAgGGcuUCCUCGGCGa -3'
miRNA:   3'- cUUGCUuuGGUUgCUuuAGGAGCUGC- -5'
26689 3' -46 NC_005808.1 + 29333 0.7 0.933644
Target:  5'- uGGCGGucGCCGGCcAAGUCCUCGAa- -3'
miRNA:   3'- cUUGCUu-UGGUUGcUUUAGGAGCUgc -5'
26689 3' -46 NC_005808.1 + 31984 0.69 0.949613
Target:  5'- -cGCGAAcucgacGCCAgcguccuguGCGAAAcCCUCGACa -3'
miRNA:   3'- cuUGCUU------UGGU---------UGCUUUaGGAGCUGc -5'
26689 3' -46 NC_005808.1 + 1718 0.69 0.9587
Target:  5'- cGGCGu-GCCGGCGAgggcguccaAGUCCUCG-CGg -3'
miRNA:   3'- cUUGCuuUGGUUGCU---------UUAGGAGCuGC- -5'
26689 3' -46 NC_005808.1 + 34351 0.69 0.962793
Target:  5'- cGGAUGAuuCCAGCGAcuUCgC-CGACGa -3'
miRNA:   3'- -CUUGCUuuGGUUGCUuuAG-GaGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.