miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26689 3' -46 NC_005808.1 + 21079 0.89 0.142886
Target:  5'- uGAACGGAugCAcaACGAAAUCCUCGACc -3'
miRNA:   3'- -CUUGCUUugGU--UGCUUUAGGAGCUGc -5'
26689 3' -46 NC_005808.1 + 9766 0.66 0.989196
Target:  5'- aGGCGAAGCCGuuGCGGcugguguAGUCCgacCGGCa -3'
miRNA:   3'- cUUGCUUUGGU--UGCU-------UUAGGa--GCUGc -5'
26689 3' -46 NC_005808.1 + 13677 0.66 0.992131
Target:  5'- cGGCGAGGCCcuggcuuuguggGACGAGugGUCggCGACGg -3'
miRNA:   3'- cUUGCUUUGG------------UUGCUU--UAGgaGCUGC- -5'
26689 3' -46 NC_005808.1 + 18697 0.66 0.9943
Target:  5'- cAugGAAGCCGcggGCGuggcgcacuUCCUUGGCGu -3'
miRNA:   3'- cUugCUUUGGU---UGCuuu------AGGAGCUGC- -5'
26689 3' -46 NC_005808.1 + 40584 0.7 0.933644
Target:  5'- -cGCGAcuucGCCAGCGAGcgCCUgGGCc -3'
miRNA:   3'- cuUGCUu---UGGUUGCUUuaGGAgCUGc -5'
26689 3' -46 NC_005808.1 + 14554 0.7 0.939283
Target:  5'- aGAcCGucGCCGACGuguUCUUCGGCGa -3'
miRNA:   3'- -CUuGCuuUGGUUGCuuuAGGAGCUGC- -5'
26689 3' -46 NC_005808.1 + 22146 0.69 0.954309
Target:  5'- cGAAgGGAACCGgaACGAGggCCUgCGGCu -3'
miRNA:   3'- -CUUgCUUUGGU--UGCUUuaGGA-GCUGc -5'
26689 3' -46 NC_005808.1 + 37070 0.69 0.962793
Target:  5'- uGGGCGGAaccugggcgGCCGGCGu-GUCCUaCGACu -3'
miRNA:   3'- -CUUGCUU---------UGGUUGCuuUAGGA-GCUGc -5'
26689 3' -46 NC_005808.1 + 7563 0.68 0.975472
Target:  5'- cGGCGccACCGgcuuggacacguccACGAAGUCgUCGGCGa -3'
miRNA:   3'- cUUGCuuUGGU--------------UGCUUUAGgAGCUGC- -5'
26689 3' -46 NC_005808.1 + 20018 0.67 0.988385
Target:  5'- aGAuCGcAACCGcgGCGAGAagcggcacaacaacaUCCUCGACa -3'
miRNA:   3'- -CUuGCuUUGGU--UGCUUU---------------AGGAGCUGc -5'
26689 3' -46 NC_005808.1 + 37379 0.68 0.97634
Target:  5'- uGGCGu--CCAAC---AUCCUCGACGu -3'
miRNA:   3'- cUUGCuuuGGUUGcuuUAGGAGCUGC- -5'
26689 3' -46 NC_005808.1 + 15108 0.68 0.973358
Target:  5'- --cCGAGGCCGcCGgcAUCCUCG-CGu -3'
miRNA:   3'- cuuGCUUUGGUuGCuuUAGGAGCuGC- -5'
26689 3' -46 NC_005808.1 + 28910 0.78 0.561111
Target:  5'- aGAugGAcGCCGACGAcAUCCUC-ACGg -3'
miRNA:   3'- -CUugCUuUGGUUGCUuUAGGAGcUGC- -5'
26689 3' -46 NC_005808.1 + 24330 0.68 0.97907
Target:  5'- uGACG--GCCGGC-AAGUUCUCGGCGc -3'
miRNA:   3'- cUUGCuuUGGUUGcUUUAGGAGCUGC- -5'
26689 3' -46 NC_005808.1 + 35576 0.74 0.75928
Target:  5'- -cGCGAGAUCAACGccAAGUCCUCGuucaugGCGa -3'
miRNA:   3'- cuUGCUUUGGUUGC--UUUAGGAGC------UGC- -5'
26689 3' -46 NC_005808.1 + 13865 0.68 0.970113
Target:  5'- uGGACGAuGCCAagGCGcucAUCCUCG-CGu -3'
miRNA:   3'- -CUUGCUuUGGU--UGCuu-UAGGAGCuGC- -5'
26689 3' -46 NC_005808.1 + 32289 0.67 0.985668
Target:  5'- uGGCGAAACUGGCGAAguggcaccccgagGUgCUgGACGa -3'
miRNA:   3'- cUUGCUUUGGUUGCUU-------------UAgGAgCUGC- -5'
26689 3' -46 NC_005808.1 + 7349 0.66 0.989353
Target:  5'- uGAGCGcgGCCu-CGA---CCUCGGCGu -3'
miRNA:   3'- -CUUGCuuUGGuuGCUuuaGGAGCUGC- -5'
26689 3' -46 NC_005808.1 + 18232 0.72 0.868647
Target:  5'- uGGCGAAugC-GCGAAGcCCUCGACc -3'
miRNA:   3'- cUUGCUUugGuUGCUUUaGGAGCUGc -5'
26689 3' -46 NC_005808.1 + 30044 0.69 0.954309
Target:  5'- -cGCGAGGCCGGCaaGAAAUUCacCGACGc -3'
miRNA:   3'- cuUGCUUUGGUUG--CUUUAGGa-GCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.