miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26689 3' -46 NC_005808.1 + 24330 0.68 0.97907
Target:  5'- uGACG--GCCGGC-AAGUUCUCGGCGc -3'
miRNA:   3'- cUUGCuuUGGUUGcUUUAGGAGCUGC- -5'
26689 3' -46 NC_005808.1 + 24770 0.71 0.893101
Target:  5'- gGAAUGAccuGCC-ACGGGucGUCCUCGAUGc -3'
miRNA:   3'- -CUUGCUu--UGGuUGCUU--UAGGAGCUGC- -5'
26689 3' -46 NC_005808.1 + 26010 0.7 0.927683
Target:  5'- uGGCGAuuUCGAgGGcuUCCUCGGCGa -3'
miRNA:   3'- cUUGCUuuGGUUgCUuuAGGAGCUGC- -5'
26689 3' -46 NC_005808.1 + 27492 0.68 0.97634
Target:  5'- -cGCGAGgauGCCGGCGg---CCUCGGCc -3'
miRNA:   3'- cuUGCUU---UGGUUGCuuuaGGAGCUGc -5'
26689 3' -46 NC_005808.1 + 28910 0.78 0.561111
Target:  5'- aGAugGAcGCCGACGAcAUCCUC-ACGg -3'
miRNA:   3'- -CUugCUuUGGUUGCUuUAGGAGcUGC- -5'
26689 3' -46 NC_005808.1 + 29333 0.7 0.933644
Target:  5'- uGGCGGucGCCGGCcAAGUCCUCGAa- -3'
miRNA:   3'- cUUGCUu-UGGUUGcUUUAGGAGCUgc -5'
26689 3' -46 NC_005808.1 + 29397 0.66 0.992131
Target:  5'- -cGCGGuaGGCCAGCaGAAUCUUgGGCGc -3'
miRNA:   3'- cuUGCU--UUGGUUGcUUUAGGAgCUGC- -5'
26689 3' -46 NC_005808.1 + 30044 0.69 0.954309
Target:  5'- -cGCGAGGCCGGCaaGAAAUUCacCGACGc -3'
miRNA:   3'- cuUGCUUUGGUUG--CUUUAGGa-GCUGC- -5'
26689 3' -46 NC_005808.1 + 31984 0.69 0.949613
Target:  5'- -cGCGAAcucgacGCCAgcguccuguGCGAAAcCCUCGACa -3'
miRNA:   3'- cuUGCUU------UGGU---------UGCUUUaGGAGCUGc -5'
26689 3' -46 NC_005808.1 + 32289 0.67 0.985668
Target:  5'- uGGCGAAACUGGCGAAguggcaccccgagGUgCUgGACGa -3'
miRNA:   3'- cUUGCUUUGGUUGCUU-------------UAgGAgCUGC- -5'
26689 3' -46 NC_005808.1 + 32774 0.69 0.962793
Target:  5'- ---aGAAGgCGGCGAAGUCCgcccUCGGCa -3'
miRNA:   3'- cuugCUUUgGUUGCUUUAGG----AGCUGc -5'
26689 3' -46 NC_005808.1 + 33772 0.66 0.993285
Target:  5'- aGGACGGuaucaaGGCCGACaccAAGUaccgCCUCGACGa -3'
miRNA:   3'- -CUUGCU------UUGGUUGc--UUUA----GGAGCUGC- -5'
26689 3' -46 NC_005808.1 + 34351 0.69 0.962793
Target:  5'- cGGAUGAuuCCAGCGAcuUCgC-CGACGa -3'
miRNA:   3'- -CUUGCUuuGGUUGCUuuAG-GaGCUGC- -5'
26689 3' -46 NC_005808.1 + 34417 0.67 0.983819
Target:  5'- cGAACGGGcaggacGCCAGCGccuUCCUgGGCc -3'
miRNA:   3'- -CUUGCUU------UGGUUGCuuuAGGAgCUGc -5'
26689 3' -46 NC_005808.1 + 35083 0.66 0.989353
Target:  5'- -cACGGuagaCAACGccAUCCUCGGCa -3'
miRNA:   3'- cuUGCUuug-GUUGCuuUAGGAGCUGc -5'
26689 3' -46 NC_005808.1 + 35576 0.74 0.75928
Target:  5'- -cGCGAGAUCAACGccAAGUCCUCGuucaugGCGa -3'
miRNA:   3'- cuUGCUUUGGUUGC--UUUAGGAGC------UGC- -5'
26689 3' -46 NC_005808.1 + 37070 0.69 0.962793
Target:  5'- uGGGCGGAaccugggcgGCCGGCGu-GUCCUaCGACu -3'
miRNA:   3'- -CUUGCUU---------UGGUUGCuuUAGGA-GCUGc -5'
26689 3' -46 NC_005808.1 + 37379 0.68 0.97634
Target:  5'- uGGCGu--CCAAC---AUCCUCGACGu -3'
miRNA:   3'- cUUGCuuuGGUUGcuuUAGGAGCUGC- -5'
26689 3' -46 NC_005808.1 + 38481 0.71 0.900648
Target:  5'- --cCGAAGCCGACGA---CCgCGACGa -3'
miRNA:   3'- cuuGCUUUGGUUGCUuuaGGaGCUGC- -5'
26689 3' -46 NC_005808.1 + 40584 0.7 0.933644
Target:  5'- -cGCGAcuucGCCAGCGAGcgCCUgGGCc -3'
miRNA:   3'- cuUGCUu---UGGUUGCUUuaGGAgCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.