Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26690 | 3' | -53.5 | NC_005808.1 | + | 9097 | 0.71 | 0.416596 |
Target: 5'- cGCGAGGCCGuucuuGCCggUGGGCAgguAUCGCCa -3' miRNA: 3'- uUGUUUUGGC-----CGG--ACCCGU---UAGUGGg -5' |
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26690 | 3' | -53.5 | NC_005808.1 | + | 37716 | 0.69 | 0.532235 |
Target: 5'- aAACGAGGCCGccgucgccGCgCUGGGCAAcgACCUg -3' miRNA: 3'- -UUGUUUUGGC--------CG-GACCCGUUagUGGG- -5' |
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26690 | 3' | -53.5 | NC_005808.1 | + | 29412 | 0.68 | 0.554592 |
Target: 5'- uACAAcGCCGGCCaaGGGC----GCCCa -3' miRNA: 3'- uUGUUuUGGCCGGa-CCCGuuagUGGG- -5' |
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26690 | 3' | -53.5 | NC_005808.1 | + | 18904 | 0.68 | 0.554592 |
Target: 5'- gGGCGcuACCGGCCUGuacguguccGGCccgaccgagGGUCGCCUg -3' miRNA: 3'- -UUGUuuUGGCCGGAC---------CCG---------UUAGUGGG- -5' |
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26690 | 3' | -53.5 | NC_005808.1 | + | 13125 | 0.68 | 0.577217 |
Target: 5'- cGCGGAACUGGCCgc-GCGcuucGUCGCCUg -3' miRNA: 3'- uUGUUUUGGCCGGaccCGU----UAGUGGG- -5' |
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26690 | 3' | -53.5 | NC_005808.1 | + | 19813 | 0.68 | 0.601183 |
Target: 5'- uGCu-GACCGGCCcgcaGGGCGuugaccaaucggcccUCACCCu -3' miRNA: 3'- uUGuuUUGGCCGGa---CCCGUu--------------AGUGGG- -5' |
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26690 | 3' | -53.5 | NC_005808.1 | + | 31684 | 0.67 | 0.622979 |
Target: 5'- uGC-AAACCGGC--GGGCAGgUCGCCa -3' miRNA: 3'- uUGuUUUGGCCGgaCCCGUU-AGUGGg -5' |
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26690 | 3' | -53.5 | NC_005808.1 | + | 4092 | 0.67 | 0.622979 |
Target: 5'- ---cAGGCCGGCCaggUGGGCGG-CGCUg -3' miRNA: 3'- uuguUUUGGCCGG---ACCCGUUaGUGGg -5' |
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26690 | 3' | -53.5 | NC_005808.1 | + | 12930 | 0.67 | 0.622979 |
Target: 5'- cACAcgGCCGcGCCcugcUGGGCAacggcuaccucAUCAUCCc -3' miRNA: 3'- uUGUuuUGGC-CGG----ACCCGU-----------UAGUGGG- -5' |
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26690 | 3' | -53.5 | NC_005808.1 | + | 41286 | 0.69 | 0.521178 |
Target: 5'- ------gUCGGCCUGguGGCcGUCGCCCu -3' miRNA: 3'- uuguuuuGGCCGGAC--CCGuUAGUGGG- -5' |
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26690 | 3' | -53.5 | NC_005808.1 | + | 22385 | 0.69 | 0.510211 |
Target: 5'- cAACA--GCCGGCCgcGGGCg--CugCCa -3' miRNA: 3'- -UUGUuuUGGCCGGa-CCCGuuaGugGG- -5' |
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26690 | 3' | -53.5 | NC_005808.1 | + | 31615 | 0.69 | 0.50694 |
Target: 5'- uGCAAu-CCGGCCUGGccgaacagguggccGCAGUguCCCc -3' miRNA: 3'- uUGUUuuGGCCGGACC--------------CGUUAguGGG- -5' |
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26690 | 3' | -53.5 | NC_005808.1 | + | 30738 | 0.66 | 0.725297 |
Target: 5'- gGGCGAuAUUGGCgCgGGGU--UCGCCCa -3' miRNA: 3'- -UUGUUuUGGCCG-GaCCCGuuAGUGGG- -5' |
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26690 | 3' | -53.5 | NC_005808.1 | + | 34954 | 0.77 | 0.174901 |
Target: 5'- cGGCAagGAGCCGGCgUGGGuCGAgccgCGCCCc -3' miRNA: 3'- -UUGU--UUUGGCCGgACCC-GUUa---GUGGG- -5' |
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26690 | 3' | -53.5 | NC_005808.1 | + | 41880 | 0.75 | 0.250642 |
Target: 5'- cGGCAAAGCCGccccuauCCUGGGCGGUaucuugggCGCCCg -3' miRNA: 3'- -UUGUUUUGGCc------GGACCCGUUA--------GUGGG- -5' |
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26690 | 3' | -53.5 | NC_005808.1 | + | 17258 | 0.74 | 0.293907 |
Target: 5'- uGCGAAcugGCCGGCCUGGaCAAUC-CCg -3' miRNA: 3'- uUGUUU---UGGCCGGACCcGUUAGuGGg -5' |
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26690 | 3' | -53.5 | NC_005808.1 | + | 18087 | 0.72 | 0.342779 |
Target: 5'- gGACGuGAUCGGCgUGGGCGccaGCCCc -3' miRNA: 3'- -UUGUuUUGGCCGgACCCGUuagUGGG- -5' |
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26690 | 3' | -53.5 | NC_005808.1 | + | 16095 | 0.71 | 0.387788 |
Target: 5'- gAAUGAuGCCGGCUUGcgagucGGCGAggaUCACCCg -3' miRNA: 3'- -UUGUUuUGGCCGGAC------CCGUU---AGUGGG- -5' |
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26690 | 3' | -53.5 | NC_005808.1 | + | 22814 | 0.7 | 0.456966 |
Target: 5'- uACcGGGCCGGCCU-GGCAAUCAgUg -3' miRNA: 3'- uUGuUUUGGCCGGAcCCGUUAGUgGg -5' |
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26690 | 3' | -53.5 | NC_005808.1 | + | 40174 | 0.7 | 0.467384 |
Target: 5'- -uCGAGGCCGGCCUGcuGCcGUaCACCUa -3' miRNA: 3'- uuGUUUUGGCCGGACc-CGuUA-GUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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