miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26690 3' -53.5 NC_005808.1 + 17904 0.66 0.702941
Target:  5'- uGGCAccgauGGACa-GCCUGGGCGuggacGUgGCCCg -3'
miRNA:   3'- -UUGU-----UUUGgcCGGACCCGU-----UAgUGGG- -5'
26690 3' -53.5 NC_005808.1 + 18087 0.72 0.342779
Target:  5'- gGACGuGAUCGGCgUGGGCGccaGCCCc -3'
miRNA:   3'- -UUGUuUUGGCCGgACCCGUuagUGGG- -5'
26690 3' -53.5 NC_005808.1 + 18904 0.68 0.554592
Target:  5'- gGGCGcuACCGGCCUGuacguguccGGCccgaccgagGGUCGCCUg -3'
miRNA:   3'- -UUGUuuUGGCCGGAC---------CCG---------UUAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 19406 0.66 0.702941
Target:  5'- cGACGAGGCCGaCCUGcuGCuGUCGCaCCa -3'
miRNA:   3'- -UUGUUUUGGCcGGACc-CGuUAGUG-GG- -5'
26690 3' -53.5 NC_005808.1 + 19792 0.71 0.426485
Target:  5'- uGCcAGGCCGGCCcGGuaGAaCACCCg -3'
miRNA:   3'- uUGuUUUGGCCGGaCCcgUUaGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 19813 0.68 0.601183
Target:  5'- uGCu-GACCGGCCcgcaGGGCGuugaccaaucggcccUCACCCu -3'
miRNA:   3'- uUGuuUUGGCCGGa---CCCGUu--------------AGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 22385 0.69 0.510211
Target:  5'- cAACA--GCCGGCCgcGGGCg--CugCCa -3'
miRNA:   3'- -UUGUuuUGGCCGGa-CCCGuuaGugGG- -5'
26690 3' -53.5 NC_005808.1 + 22479 0.7 0.477923
Target:  5'- aGGCGGAACCaggggcGGgCUGGGCuGGUCauGCCCg -3'
miRNA:   3'- -UUGUUUUGG------CCgGACCCG-UUAG--UGGG- -5'
26690 3' -53.5 NC_005808.1 + 22768 1.09 0.000921
Target:  5'- gAACAAAACCGGCCUGGGCAAUCACCCc -3'
miRNA:   3'- -UUGUUUUGGCCGGACCCGUUAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 22814 0.7 0.456966
Target:  5'- uACcGGGCCGGCCU-GGCAAUCAgUg -3'
miRNA:   3'- uUGuUUUGGCCGGAcCCGUUAGUgGg -5'
26690 3' -53.5 NC_005808.1 + 23916 0.66 0.688242
Target:  5'- -cCGAGGCCcgcgugguguaacaGGCCggGGGCGGgcgcCGCCCc -3'
miRNA:   3'- uuGUUUUGG--------------CCGGa-CCCGUUa---GUGGG- -5'
26690 3' -53.5 NC_005808.1 + 24570 0.68 0.588607
Target:  5'- uGGCGAGGCCGGCCacggucGGGCcGUCcggcguguccuuGCCg -3'
miRNA:   3'- -UUGUUUUGGCCGGa-----CCCGuUAG------------UGGg -5'
26690 3' -53.5 NC_005808.1 + 25361 0.77 0.179918
Target:  5'- cGCAuAGCCGGCCaccGGGCAggCGCCa -3'
miRNA:   3'- uUGUuUUGGCCGGa--CCCGUuaGUGGg -5'
26690 3' -53.5 NC_005808.1 + 26060 0.66 0.691644
Target:  5'- gAGCAAGG-CGGCCUGuacGGCuauAUCGgCCa -3'
miRNA:   3'- -UUGUUUUgGCCGGAC---CCGu--UAGUgGG- -5'
26690 3' -53.5 NC_005808.1 + 26262 0.67 0.645954
Target:  5'- gGGCAcccGCCGGCCUGGuCGGcUCGCgCa -3'
miRNA:   3'- -UUGUuu-UGGCCGGACCcGUU-AGUGgG- -5'
26690 3' -53.5 NC_005808.1 + 29412 0.68 0.554592
Target:  5'- uACAAcGCCGGCCaaGGGC----GCCCa -3'
miRNA:   3'- uUGUUuUGGCCGGa-CCCGuuagUGGG- -5'
26690 3' -53.5 NC_005808.1 + 29930 0.66 0.702941
Target:  5'- cGACAcgcGCCGcGCaugaUGGGCGAcgACCCg -3'
miRNA:   3'- -UUGUuu-UGGC-CGg---ACCCGUUagUGGG- -5'
26690 3' -53.5 NC_005808.1 + 30294 0.66 0.684835
Target:  5'- cAACGAAuucgacgccgccguaGCCGGCacgCUGGGCcagcaACCCg -3'
miRNA:   3'- -UUGUUU---------------UGGCCG---GACCCGuuag-UGGG- -5'
26690 3' -53.5 NC_005808.1 + 30738 0.66 0.725297
Target:  5'- gGGCGAuAUUGGCgCgGGGU--UCGCCCa -3'
miRNA:   3'- -UUGUUuUGGCCG-GaCCCGuuAGUGGG- -5'
26690 3' -53.5 NC_005808.1 + 31023 0.71 0.387788
Target:  5'- gGGCuu-GCCGGCC-GaGGCAAUCGCgCg -3'
miRNA:   3'- -UUGuuuUGGCCGGaC-CCGUUAGUGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.