Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26691 | 5' | -51.5 | NC_005808.1 | + | 32942 | 0.66 | 0.828314 |
Target: 5'- cGGCcagGGCGACcacGGCUGCGucgauuacuGGcAAGACCc -3' miRNA: 3'- -CCG---CCGCUGu--UCGACGU---------UC-UUUUGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 38980 | 0.66 | 0.84692 |
Target: 5'- cGGCGGCGugAauGGC-GCAuccGAAuacacGGCCa -3' miRNA: 3'- -CCGCCGCugU--UCGaCGUu--CUU-----UUGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 7739 | 0.66 | 0.818662 |
Target: 5'- cGGCGGcCGGCuuGCUGUuggcgacgAAGGAAuCCa -3' miRNA: 3'- -CCGCC-GCUGuuCGACG--------UUCUUUuGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 5069 | 0.66 | 0.84692 |
Target: 5'- aGGCcGCGGCAGGUuuUGCGguuGGAAcaggcGGCCg -3' miRNA: 3'- -CCGcCGCUGUUCG--ACGU---UCUU-----UUGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 24832 | 0.66 | 0.837737 |
Target: 5'- cGCGcGCGACucGCUGCucGAAcugcacACCUg -3' miRNA: 3'- cCGC-CGCUGuuCGACGuuCUUu-----UGGA- -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 1724 | 0.66 | 0.798717 |
Target: 5'- cGGUGGCGACAAugUGguAGAugaacACCg -3' miRNA: 3'- -CCGCCGCUGUUcgACguUCUuu---UGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 16088 | 0.66 | 0.834935 |
Target: 5'- uGGCGGUGaaugaugccggcuuGCGAGUcgGCGAGGAucACCc -3' miRNA: 3'- -CCGCCGC--------------UGUUCGa-CGUUCUUu-UGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 15321 | 0.66 | 0.837737 |
Target: 5'- aGGCGcGCGGCGAaCUGCGguucauugccucGGccaAGAGCCUg -3' miRNA: 3'- -CCGC-CGCUGUUcGACGU------------UC---UUUUGGA- -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 16748 | 0.66 | 0.828314 |
Target: 5'- -aCGGCGACAAGaccaGCAuGGAAcuGACCg -3' miRNA: 3'- ccGCCGCUGUUCga--CGU-UCUU--UUGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 35099 | 0.66 | 0.808793 |
Target: 5'- aGCGcGCGcCGccAGUUGCAAGggG-CCUa -3' miRNA: 3'- cCGC-CGCuGU--UCGACGUUCuuUuGGA- -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 41429 | 0.66 | 0.828314 |
Target: 5'- -cCGGCGGCGAGacuaUGUggGGcguGACCg -3' miRNA: 3'- ccGCCGCUGUUCg---ACGuuCUu--UUGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 17077 | 0.66 | 0.827359 |
Target: 5'- cGGCGGCGGCAAaaccgaccucaucGCggGCcuGAcccuGACCa -3' miRNA: 3'- -CCGCCGCUGUU-------------CGa-CGuuCUu---UUGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 38358 | 0.66 | 0.84692 |
Target: 5'- -aCGGCGGgAAGCUGgcAGAAAACg- -3' miRNA: 3'- ccGCCGCUgUUCGACguUCUUUUGga -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 42148 | 0.66 | 0.837737 |
Target: 5'- uGGUGcGCGGCGAGCagaaggacaGCAcuAAGACCa -3' miRNA: 3'- -CCGC-CGCUGUUCGa--------CGUucUUUUGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 7394 | 0.66 | 0.815724 |
Target: 5'- cGCGGCGACcuuccaccagcuugAAGCcggGCAccGGAugGCCg -3' miRNA: 3'- cCGCCGCUG--------------UUCGa--CGU--UCUuuUGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 7685 | 0.66 | 0.798717 |
Target: 5'- uGGCGGCGAUcuGCgGCcGGu-AGCCc -3' miRNA: 3'- -CCGCCGCUGuuCGaCGuUCuuUUGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 32005 | 0.67 | 0.788449 |
Target: 5'- uGCGGUG-CAGGCUGCGc----GCCUg -3' miRNA: 3'- cCGCCGCuGUUCGACGUucuuuUGGA- -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 34217 | 0.67 | 0.767382 |
Target: 5'- gGGCGGCGAUucucgaagauucGAGCgcggcggcGCAGGAGGuACUg -3' miRNA: 3'- -CCGCCGCUG------------UUCGa-------CGUUCUUU-UGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 4825 | 0.67 | 0.777999 |
Target: 5'- uGGcCGGCGACAGGUcGCcguAGucgauGACCa -3' miRNA: 3'- -CC-GCCGCUGUUCGaCGu--UCuu---UUGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 27441 | 0.67 | 0.788449 |
Target: 5'- cGGCGGCcGCAGGCccugGCGcuGGuauGCCa -3' miRNA: 3'- -CCGCCGcUGUUCGa---CGU--UCuuuUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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