Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26691 | 5' | -51.5 | NC_005808.1 | + | 41895 | 0.67 | 0.75661 |
Target: 5'- cGUGGcCGACAAGaucauCAAGAAAACCc -3' miRNA: 3'- cCGCC-GCUGUUCgac--GUUCUUUUGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 35199 | 0.67 | 0.788449 |
Target: 5'- -cCGGCuuCAAGCUGguGGAAGgucGCCg -3' miRNA: 3'- ccGCCGcuGUUCGACguUCUUU---UGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 10246 | 0.68 | 0.689482 |
Target: 5'- cGGCGGCGACcgcagcgaccuGGGCgGCGguugucGGGAcGCCg -3' miRNA: 3'- -CCGCCGCUG-----------UUCGaCGU------UCUUuUGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 24613 | 0.68 | 0.700901 |
Target: 5'- cGGCGGCGACuuGgUGUAAcGAGucuCCUu -3' miRNA: 3'- -CCGCCGCUGuuCgACGUU-CUUuu-GGA- -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 18336 | 0.68 | 0.689482 |
Target: 5'- cGGCgccacgcucaaGGUGGCAAGCcGCGAGGAcAUCa -3' miRNA: 3'- -CCG-----------CCGCUGUUCGaCGUUCUUuUGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 14894 | 0.68 | 0.689482 |
Target: 5'- cGGCGGCGAgccGCUGCcGGcgcgcGGCCUg -3' miRNA: 3'- -CCGCCGCUguuCGACGuUCuu---UUGGA- -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 14855 | 0.68 | 0.689482 |
Target: 5'- --gGGCaGCGAGUUGCGcGAGGGCCUc -3' miRNA: 3'- ccgCCGcUGUUCGACGUuCUUUUGGA- -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 10890 | 0.68 | 0.723501 |
Target: 5'- cGCGcGCGGCGGGCUGguCAGGcgGugCUg -3' miRNA: 3'- cCGC-CGCUGUUCGAC--GUUCuuUugGA- -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 25654 | 0.68 | 0.689482 |
Target: 5'- -aCGGCGGCAcGCUGCuGGAcggcGCCg -3' miRNA: 3'- ccGCCGCUGUuCGACGuUCUuu--UGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 23652 | 0.68 | 0.689482 |
Target: 5'- cGGCGGCGggcaGCAA-CUGCAccAGgcGACCc -3' miRNA: 3'- -CCGCCGC----UGUUcGACGU--UCuuUUGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 31341 | 0.68 | 0.700901 |
Target: 5'- cGCGGCGACAuucaAGCaguaccUGgAAGAAGACg- -3' miRNA: 3'- cCGCCGCUGU----UCG------ACgUUCUUUUGga -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 11421 | 0.68 | 0.712244 |
Target: 5'- aGCGGCGAgCcGGCgUGCAGGuc-GCCg -3' miRNA: 3'- cCGCCGCU-GuUCG-ACGUUCuuuUGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 6642 | 0.69 | 0.654912 |
Target: 5'- cGCGGacaCGuACAGGUUGCcGGGGAAGCCg -3' miRNA: 3'- cCGCC---GC-UGUUCGACG-UUCUUUUGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 42253 | 0.69 | 0.643326 |
Target: 5'- uGGCGGaCGGCcuGCUGCGcGAc-GCCa -3' miRNA: 3'- -CCGCC-GCUGuuCGACGUuCUuuUGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 37433 | 0.69 | 0.642166 |
Target: 5'- aGGCGGUGGCAGGCaaUGCGGcAAAcaucaacgucguaGCCg -3' miRNA: 3'- -CCGCCGCUGUUCG--ACGUUcUUU-------------UGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 42424 | 0.69 | 0.643326 |
Target: 5'- cGGUGcccaGCGACAccggGGCgcauccgccUGCGGGGAAGCCUg -3' miRNA: 3'- -CCGC----CGCUGU----UCG---------ACGUUCUUUUGGA- -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 38717 | 0.69 | 0.678003 |
Target: 5'- cGGCGGCGACG-GCaGCGc---GGCCUa -3' miRNA: 3'- -CCGCCGCUGUuCGaCGUucuuUUGGA- -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 18818 | 0.69 | 0.647962 |
Target: 5'- uGGCGGCG-CAggaAGCUGCgaAuuuugcgcggcauguAGAAGGCCg -3' miRNA: 3'- -CCGCCGCuGU---UCGACG--U---------------UCUUUUGGa -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 21454 | 0.7 | 0.58545 |
Target: 5'- uGCGGCGG-GGGCgGCAGGAuguuGGCCUc -3' miRNA: 3'- cCGCCGCUgUUCGaCGUUCUu---UUGGA- -5' |
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26691 | 5' | -51.5 | NC_005808.1 | + | 9342 | 0.7 | 0.62013 |
Target: 5'- gGGCGGCGGCAuccuuuugcAGUUGCuugauGAugcGGCCg -3' miRNA: 3'- -CCGCCGCUGU---------UCGACGuu---CUu--UUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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