miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26691 5' -51.5 NC_005808.1 + 42424 0.69 0.643326
Target:  5'- cGGUGcccaGCGACAccggGGCgcauccgccUGCGGGGAAGCCUg -3'
miRNA:   3'- -CCGC----CGCUGU----UCG---------ACGUUCUUUUGGA- -5'
26691 5' -51.5 NC_005808.1 + 42253 0.69 0.643326
Target:  5'- uGGCGGaCGGCcuGCUGCGcGAc-GCCa -3'
miRNA:   3'- -CCGCC-GCUGuuCGACGUuCUuuUGGa -5'
26691 5' -51.5 NC_005808.1 + 42148 0.66 0.837737
Target:  5'- uGGUGcGCGGCGAGCagaaggacaGCAcuAAGACCa -3'
miRNA:   3'- -CCGC-CGCUGUUCGa--------CGUucUUUUGGa -5'
26691 5' -51.5 NC_005808.1 + 41895 0.67 0.75661
Target:  5'- cGUGGcCGACAAGaucauCAAGAAAACCc -3'
miRNA:   3'- cCGCC-GCUGUUCgac--GUUCUUUUGGa -5'
26691 5' -51.5 NC_005808.1 + 41622 0.73 0.42231
Target:  5'- cGGCcaGGCGGCcaaguGGCUGCAAGcu-GCCg -3'
miRNA:   3'- -CCG--CCGCUGu----UCGACGUUCuuuUGGa -5'
26691 5' -51.5 NC_005808.1 + 41557 0.72 0.463388
Target:  5'- cGCGGCGACAuGCUGCcgcc-GGCCg -3'
miRNA:   3'- cCGCCGCUGUuCGACGuucuuUUGGa -5'
26691 5' -51.5 NC_005808.1 + 41429 0.66 0.828314
Target:  5'- -cCGGCGGCGAGacuaUGUggGGcguGACCg -3'
miRNA:   3'- ccGCCGCUGUUCg---ACGuuCUu--UUGGa -5'
26691 5' -51.5 NC_005808.1 + 38980 0.66 0.84692
Target:  5'- cGGCGGCGugAauGGC-GCAuccGAAuacacGGCCa -3'
miRNA:   3'- -CCGCCGCugU--UCGaCGUu--CUU-----UUGGa -5'
26691 5' -51.5 NC_005808.1 + 38717 0.69 0.678003
Target:  5'- cGGCGGCGACG-GCaGCGc---GGCCUa -3'
miRNA:   3'- -CCGCCGCUGUuCGaCGUucuuUUGGA- -5'
26691 5' -51.5 NC_005808.1 + 38358 0.66 0.84692
Target:  5'- -aCGGCGGgAAGCUGgcAGAAAACg- -3'
miRNA:   3'- ccGCCGCUgUUCGACguUCUUUUGga -5'
26691 5' -51.5 NC_005808.1 + 37433 0.69 0.642166
Target:  5'- aGGCGGUGGCAGGCaaUGCGGcAAAcaucaacgucguaGCCg -3'
miRNA:   3'- -CCGCCGCUGUUCG--ACGUUcUUU-------------UGGa -5'
26691 5' -51.5 NC_005808.1 + 36457 0.71 0.517502
Target:  5'- cGGCGGCGAguGGgUGCugauGGAAGGgCa -3'
miRNA:   3'- -CCGCCGCUguUCgACGu---UCUUUUgGa -5'
26691 5' -51.5 NC_005808.1 + 35199 0.67 0.788449
Target:  5'- -cCGGCuuCAAGCUGguGGAAGgucGCCg -3'
miRNA:   3'- ccGCCGcuGUUCGACguUCUUU---UGGa -5'
26691 5' -51.5 NC_005808.1 + 35099 0.66 0.808793
Target:  5'- aGCGcGCGcCGccAGUUGCAAGggG-CCUa -3'
miRNA:   3'- cCGC-CGCuGU--UCGACGUUCuuUuGGA- -5'
26691 5' -51.5 NC_005808.1 + 34217 0.67 0.767382
Target:  5'- gGGCGGCGAUucucgaagauucGAGCgcggcggcGCAGGAGGuACUg -3'
miRNA:   3'- -CCGCCGCUG------------UUCGa-------CGUUCUUU-UGGa -5'
26691 5' -51.5 NC_005808.1 + 32942 0.66 0.828314
Target:  5'- cGGCcagGGCGACcacGGCUGCGucgauuacuGGcAAGACCc -3'
miRNA:   3'- -CCG---CCGCUGu--UCGACGU---------UC-UUUUGGa -5'
26691 5' -51.5 NC_005808.1 + 32005 0.67 0.788449
Target:  5'- uGCGGUG-CAGGCUGCGc----GCCUg -3'
miRNA:   3'- cCGCCGCuGUUCGACGUucuuuUGGA- -5'
26691 5' -51.5 NC_005808.1 + 31341 0.68 0.700901
Target:  5'- cGCGGCGACAuucaAGCaguaccUGgAAGAAGACg- -3'
miRNA:   3'- cCGCCGCUGU----UCG------ACgUUCUUUUGga -5'
26691 5' -51.5 NC_005808.1 + 30423 0.73 0.432376
Target:  5'- cGGCauGGCGAUGAGC-GCGGGcAGGGCCUc -3'
miRNA:   3'- -CCG--CCGCUGUUCGaCGUUC-UUUUGGA- -5'
26691 5' -51.5 NC_005808.1 + 29517 0.7 0.581999
Target:  5'- uGGCGaCGACAGGCUGUgcccccuggccgcaGAGGAcACCc -3'
miRNA:   3'- -CCGCcGCUGUUCGACG--------------UUCUUuUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.