miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26692 5' -57.9 NC_005808.1 + 4390 0.68 0.381522
Target:  5'- cAGGCGcCGUCGcGCCGGGCcuuGAGcgugcGGCa -3'
miRNA:   3'- -UCCGC-GCGGUaCGGCUCG---UUCaa---CCG- -5'
26692 5' -57.9 NC_005808.1 + 17092 0.68 0.381522
Target:  5'- cGGCGCGguuCUcgGCCGGGCcuuggGGCu -3'
miRNA:   3'- uCCGCGC---GGuaCGGCUCGuucaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 13465 0.68 0.372601
Target:  5'- cGG-GCGCgGUGUCGGGCAugaccugGGCg -3'
miRNA:   3'- uCCgCGCGgUACGGCUCGUucaa---CCG- -5'
26692 5' -57.9 NC_005808.1 + 9220 0.68 0.3726
Target:  5'- cGGUG-GCCGUGCCGcgauAGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGC----UCGuUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 9124 0.68 0.3726
Target:  5'- cGGUG-GCCGUGCCGcgauAGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGC----UCGuUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 9316 0.68 0.3726
Target:  5'- cGGUG-GCCGUGCCGcgauAGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGC----UCGuUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 9364 0.68 0.3726
Target:  5'- cGGUG-GCCGUGCCGcgauAGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGC----UCGuUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 9028 0.68 0.3726
Target:  5'- cGGUG-GCCGUGCCGcgauAGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGC----UCGuUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 9076 0.68 0.3726
Target:  5'- cGGUG-GCCGUGCCGcgauAGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGC----UCGuUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 9172 0.68 0.3726
Target:  5'- cGGUG-GCCGUGCCGcgauAGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGC----UCGuUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 9268 0.68 0.3726
Target:  5'- cGGUG-GCCGUGCCGcgauAGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGC----UCGuUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 10478 0.68 0.369951
Target:  5'- gGGGCGUcgaggucggcagcgGCCAgggcGuuGAGCAAcgcggccguGUUGGCg -3'
miRNA:   3'- -UCCGCG--------------CGGUa---CggCUCGUU---------CAACCG- -5'
26692 5' -57.9 NC_005808.1 + 14412 0.68 0.363821
Target:  5'- aAGGCGcCGCaCcUGCUGGGCGug--GGCa -3'
miRNA:   3'- -UCCGC-GCG-GuACGGCUCGUucaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 14321 0.68 0.355187
Target:  5'- uGGcGCGCGCCuuggcugaacUGCCGGGCcuGcUGGUu -3'
miRNA:   3'- -UC-CGCGCGGu---------ACGGCUCGuuCaACCG- -5'
26692 5' -57.9 NC_005808.1 + 16322 0.68 0.355186
Target:  5'- -cGCGCGCgAUGCgCGAGCcgaccAGGccGGCg -3'
miRNA:   3'- ucCGCGCGgUACG-GCUCG-----UUCaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 42387 0.68 0.355186
Target:  5'- gAGGUGCGCCAguucGCCGugucgcccGGCAGcGUgacGGUg -3'
miRNA:   3'- -UCCGCGCGGUa---CGGC--------UCGUU-CAa--CCG- -5'
26692 5' -57.9 NC_005808.1 + 13278 0.68 0.346697
Target:  5'- cGGCGacCGCCAccgccuugaagUGCUGGGCAAG--GGCc -3'
miRNA:   3'- uCCGC--GCGGU-----------ACGGCUCGUUCaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 34548 0.68 0.338354
Target:  5'- uGGGCGCGCguCAUGgaCGgcGGCAAGgacGGCg -3'
miRNA:   3'- -UCCGCGCG--GUACg-GC--UCGUUCaa-CCG- -5'
26692 5' -57.9 NC_005808.1 + 14425 0.68 0.338354
Target:  5'- cAGGCGCGCC-UGC--GGCAccguGUUGGg -3'
miRNA:   3'- -UCCGCGCGGuACGgcUCGUu---CAACCg -5'
26692 5' -57.9 NC_005808.1 + 3464 0.68 0.338354
Target:  5'- -cGCGCGCCccgAUGUucgCGGGCGAGUUcgacGGCc -3'
miRNA:   3'- ucCGCGCGG---UACG---GCUCGUUCAA----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.