Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 9675 | 0.67 | 0.437946 |
Target: 5'- uGGcCGaacaGCCA-GCCGuGCAGGccgUGGCc -3' miRNA: 3'- uCC-GCg---CGGUaCGGCuCGUUCa--ACCG- -5' |
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26692 | 5' | -57.9 | NC_005808.1 | + | 34526 | 0.67 | 0.43209 |
Target: 5'- cGuGCGCGCCuugggcggugaacugAUgGUCGAGCAgcGGUUGaGCg -3' miRNA: 3'- uC-CGCGCGG---------------UA-CGGCUCGU--UCAAC-CG- -5' |
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26692 | 5' | -57.9 | NC_005808.1 | + | 8748 | 0.67 | 0.428211 |
Target: 5'- aGGGCGCGCgcguauucaCGUGCCGcuucgGGCAGcacgcGGCg -3' miRNA: 3'- -UCCGCGCG---------GUACGGC-----UCGUUcaa--CCG- -5' |
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26692 | 5' | -57.9 | NC_005808.1 | + | 11509 | 0.67 | 0.428211 |
Target: 5'- aGGGCaGCGCCugcGCUGGcgugaggcccuGCGAGcgGGCa -3' miRNA: 3'- -UCCG-CGCGGua-CGGCU-----------CGUUCaaCCG- -5' |
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26692 | 5' | -57.9 | NC_005808.1 | + | 8939 | 0.67 | 0.42821 |
Target: 5'- cGGUG-GCCGUGCCGGauucGCcAGcggUGGCc -3' miRNA: 3'- uCCGCgCGGUACGGCU----CGuUCa--ACCG- -5' |
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26692 | 5' | -57.9 | NC_005808.1 | + | 24322 | 0.67 | 0.42821 |
Target: 5'- cGGCcCGCUgacgGCCG-GCAAGUUcucGGCg -3' miRNA: 3'- uCCGcGCGGua--CGGCuCGUUCAA---CCG- -5' |
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26692 | 5' | -57.9 | NC_005808.1 | + | 27460 | 0.67 | 0.427244 |
Target: 5'- uGGGCGCauccgccGCCAgcaugggGUCGGGCcuGGUaGGCa -3' miRNA: 3'- -UCCGCG-------CGGUa------CGGCUCGu-UCAaCCG- -5' |
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26692 | 5' | -57.9 | NC_005808.1 | + | 30123 | 0.67 | 0.422431 |
Target: 5'- gAGGcCGCGCCAgaacacgccGCCGGccugcaccGCGucggacaucagcggcAGUUGGCg -3' miRNA: 3'- -UCC-GCGCGGUa--------CGGCU--------CGU---------------UCAACCG- -5' |
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26692 | 5' | -57.9 | NC_005808.1 | + | 12488 | 0.67 | 0.418603 |
Target: 5'- uGGCGCgGCCucaucGCCuGGGaCAAGggccgUGGCg -3' miRNA: 3'- uCCGCG-CGGua---CGG-CUC-GUUCa----ACCG- -5' |
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26692 | 5' | -57.9 | NC_005808.1 | + | 18664 | 0.67 | 0.412902 |
Target: 5'- cGGGCGUgcgccugaccaucacGCCuAUGCCGGcauggaagccGCGGGcgUGGCg -3' miRNA: 3'- -UCCGCG---------------CGG-UACGGCU----------CGUUCa-ACCG- -5' |
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26692 | 5' | -57.9 | NC_005808.1 | + | 17303 | 0.67 | 0.403508 |
Target: 5'- cGGGCGCGCauccauuccggcauaUggGCCGGcuuggucuuGCGuuGGUUGGCa -3' miRNA: 3'- -UCCGCGCG---------------GuaCGGCU---------CGU--UCAACCG- -5' |
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26692 | 5' | -57.9 | NC_005808.1 | + | 40345 | 0.67 | 0.399789 |
Target: 5'- uGGuGCGCGUCGaacUGCCGGcCAAGgcccGGCg -3' miRNA: 3'- -UC-CGCGCGGU---ACGGCUcGUUCaa--CCG- -5' |
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26692 | 5' | -57.9 | NC_005808.1 | + | 32148 | 0.67 | 0.399788 |
Target: 5'- aGGGCGaCGCCAagggcgccauUGCCaAGCu-GUUGGa -3' miRNA: 3'- -UCCGC-GCGGU----------ACGGcUCGuuCAACCg -5' |
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26692 | 5' | -57.9 | NC_005808.1 | + | 9895 | 0.67 | 0.390586 |
Target: 5'- cAGGCGCgugGCgAUGUCGAGCugcacuucGAGgaaaaagUGGCc -3' miRNA: 3'- -UCCGCG---CGgUACGGCUCG--------UUCa------ACCG- -5' |
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26692 | 5' | -57.9 | NC_005808.1 | + | 16581 | 0.67 | 0.390586 |
Target: 5'- cGaCGCGCCGgacgagGCCGAccacGCGAugguGUUGGCg -3' miRNA: 3'- uCcGCGCGGUa-----CGGCU----CGUU----CAACCG- -5' |
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26692 | 5' | -57.9 | NC_005808.1 | + | 31856 | 0.67 | 0.390585 |
Target: 5'- cGaGCGCGCCcuUGgCGAGCAGcaaGGCg -3' miRNA: 3'- uC-CGCGCGGu-ACgGCUCGUUcaaCCG- -5' |
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26692 | 5' | -57.9 | NC_005808.1 | + | 17520 | 0.67 | 0.390585 |
Target: 5'- cGGGCGCGCUgcGCUGGGU-----GGCg -3' miRNA: 3'- -UCCGCGCGGuaCGGCUCGuucaaCCG- -5' |
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26692 | 5' | -57.9 | NC_005808.1 | + | 29596 | 0.68 | 0.385131 |
Target: 5'- cAGGCGCGCgguuugccaguugucCAgcGCCGGGCGcuugUGGCc -3' miRNA: 3'- -UCCGCGCG---------------GUa-CGGCUCGUuca-ACCG- -5' |
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26692 | 5' | -57.9 | NC_005808.1 | + | 23742 | 0.68 | 0.381522 |
Target: 5'- uGGCgcgcagcaGCGCCAUGCCGGcGCcaccgGGCc -3' miRNA: 3'- uCCG--------CGCGGUACGGCU-CGuucaaCCG- -5' |
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26692 | 5' | -57.9 | NC_005808.1 | + | 17092 | 0.68 | 0.381522 |
Target: 5'- cGGCGCGguuCUcgGCCGGGCcuuggGGCu -3' miRNA: 3'- uCCGCGC---GGuaCGGCUCGuucaaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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