Results 21 - 40 of 101 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 24598 | 0.71 | 0.236915 |
Target: 5'- cGGCGUGuCCuUGCCGGGguAGgucagcGGCa -3' miRNA: 3'- uCCGCGC-GGuACGGCUCguUCaa----CCG- -5' |
|||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 4021 | 0.7 | 0.24968 |
Target: 5'- cGGCcaccaGCGUCAUGCCGcGCGGGUcGaGCg -3' miRNA: 3'- uCCG-----CGCGGUACGGCuCGUUCAaC-CG- -5' |
|||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 25758 | 0.7 | 0.24968 |
Target: 5'- uGGGCGCGC--UGCUGGGCGGc--GGCa -3' miRNA: 3'- -UCCGCGCGguACGGCUCGUUcaaCCG- -5' |
|||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 20213 | 0.7 | 0.256273 |
Target: 5'- uGGCaGCGCCcgcgGCCG-GCu-GUUGGCc -3' miRNA: 3'- uCCG-CGCGGua--CGGCuCGuuCAACCG- -5' |
|||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 20023 | 0.7 | 0.25895 |
Target: 5'- uGGCGCGCCugcAucacaggcagcaucuUGUCGAGCAccAGUUGcGCc -3' miRNA: 3'- uCCGCGCGG---U---------------ACGGCUCGU--UCAAC-CG- -5' |
|||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 14819 | 0.7 | 0.260972 |
Target: 5'- cGGCGCGCgcuucguguaCGUGuCCGAGCcggacgagggcagcGAGUUGcGCg -3' miRNA: 3'- uCCGCGCG----------GUAC-GGCUCG--------------UUCAAC-CG- -5' |
|||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 33380 | 0.7 | 0.281909 |
Target: 5'- cGGGCGCGCCgcagaacGUgcgccgcgccGCCGAGCAGGccaacgucgacGGCg -3' miRNA: 3'- -UCCGCGCGG-------UA----------CGGCUCGUUCaa---------CCG- -5' |
|||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 13302 | 0.7 | 0.284075 |
Target: 5'- -aGCGCGCCGggGCCG-GCGuuguAGgcGGCg -3' miRNA: 3'- ucCGCGCGGUa-CGGCuCGU----UCaaCCG- -5' |
|||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 2758 | 0.69 | 0.289178 |
Target: 5'- cGGGCGUGCCGaccacUGCCGAcaccucgacguugcGCAGGU--GCg -3' miRNA: 3'- -UCCGCGCGGU-----ACGGCU--------------CGUUCAacCG- -5' |
|||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 5804 | 0.69 | 0.291388 |
Target: 5'- cGGCaGCGCCAgcggauaGUCGGGCA---UGGCg -3' miRNA: 3'- uCCG-CGCGGUa------CGGCUCGUucaACCG- -5' |
|||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 31221 | 0.69 | 0.298847 |
Target: 5'- cAGGU-CGCCAccgaggUGCCGGGCGAGcaGGUc -3' miRNA: 3'- -UCCGcGCGGU------ACGGCUCGUUCaaCCG- -5' |
|||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 39028 | 0.69 | 0.298847 |
Target: 5'- cGGCGCGUCGcugaaauuuaUGCgGcGCG-GUUGGCg -3' miRNA: 3'- uCCGCGCGGU----------ACGgCuCGUuCAACCG- -5' |
|||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 8986 | 0.69 | 0.306453 |
Target: 5'- cGGUG-GCCGUGCCGccAGCGG--UGGCc -3' miRNA: 3'- uCCGCgCGGUACGGC--UCGUUcaACCG- -5' |
|||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 40572 | 0.69 | 0.306454 |
Target: 5'- gAGGCG-GCCGguaUGCCGGuGCuGG-UGGCg -3' miRNA: 3'- -UCCGCgCGGU---ACGGCU-CGuUCaACCG- -5' |
|||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 6718 | 0.69 | 0.313425 |
Target: 5'- uGGGCGCGCaucUGCuUGAGCAcggcgucGGccUUGGCg -3' miRNA: 3'- -UCCGCGCGgu-ACG-GCUCGU-------UC--AACCG- -5' |
|||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 23538 | 0.69 | 0.322109 |
Target: 5'- cGGCGCacgcggucgaugGCCucgGCCGAcaucgccgGCAGGUgcgGGCg -3' miRNA: 3'- uCCGCG------------CGGua-CGGCU--------CGUUCAa--CCG- -5' |
|||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 2846 | 0.69 | 0.330158 |
Target: 5'- aAGGCcagccCGCCAaGCCGuAGC--GUUGGCa -3' miRNA: 3'- -UCCGc----GCGGUaCGGC-UCGuuCAACCG- -5' |
|||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 12842 | 0.69 | 0.330158 |
Target: 5'- -uGCGCGCCAacucGuCCGGGCu-GUUGGUc -3' miRNA: 3'- ucCGCGCGGUa---C-GGCUCGuuCAACCG- -5' |
|||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 37212 | 0.69 | 0.330158 |
Target: 5'- cGGCGacgugagcacCGUCAgcacgcaccUGUCGAGCAuGUUGGCu -3' miRNA: 3'- uCCGC----------GCGGU---------ACGGCUCGUuCAACCG- -5' |
|||||||
26692 | 5' | -57.9 | NC_005808.1 | + | 37806 | 0.68 | 0.337528 |
Target: 5'- -cGCaGCGCCAgccggcgUGCUGGGCGcAGUgugGGCg -3' miRNA: 3'- ucCG-CGCGGU-------ACGGCUCGU-UCAa--CCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home