miRNA display CGI


Results 21 - 40 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26692 5' -57.9 NC_005808.1 + 8748 0.67 0.428211
Target:  5'- aGGGCGCGCgcguauucaCGUGCCGcuucgGGCAGcacgcGGCg -3'
miRNA:   3'- -UCCGCGCG---------GUACGGC-----UCGUUcaa--CCG- -5'
26692 5' -57.9 NC_005808.1 + 8829 0.68 0.381522
Target:  5'- uGGGuCGgGCCA-GCCGcaacgcgggccAGCGcGUUGGCc -3'
miRNA:   3'- -UCC-GCgCGGUaCGGC-----------UCGUuCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 8939 0.67 0.42821
Target:  5'- cGGUG-GCCGUGCCGGauucGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGCU----CGuUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 8986 0.69 0.306453
Target:  5'- cGGUG-GCCGUGCCGccAGCGG--UGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGC--UCGUUcaACCG- -5'
26692 5' -57.9 NC_005808.1 + 9028 0.68 0.3726
Target:  5'- cGGUG-GCCGUGCCGcgauAGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGC----UCGuUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 9076 0.68 0.3726
Target:  5'- cGGUG-GCCGUGCCGcgauAGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGC----UCGuUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 9124 0.68 0.3726
Target:  5'- cGGUG-GCCGUGCCGcgauAGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGC----UCGuUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 9172 0.68 0.3726
Target:  5'- cGGUG-GCCGUGCCGcgauAGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGC----UCGuUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 9220 0.68 0.3726
Target:  5'- cGGUG-GCCGUGCCGcgauAGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGC----UCGuUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 9268 0.68 0.3726
Target:  5'- cGGUG-GCCGUGCCGcgauAGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGC----UCGuUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 9316 0.68 0.3726
Target:  5'- cGGUG-GCCGUGCCGcgauAGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGC----UCGuUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 9364 0.68 0.3726
Target:  5'- cGGUG-GCCGUGCCGcgauAGCcAGcggUGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGC----UCGuUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 9675 0.67 0.437946
Target:  5'- uGGcCGaacaGCCA-GCCGuGCAGGccgUGGCc -3'
miRNA:   3'- uCC-GCg---CGGUaCGGCuCGUUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 9895 0.67 0.390586
Target:  5'- cAGGCGCgugGCgAUGUCGAGCugcacuucGAGgaaaaagUGGCc -3'
miRNA:   3'- -UCCGCG---CGgUACGGCUCG--------UUCa------ACCG- -5'
26692 5' -57.9 NC_005808.1 + 10478 0.68 0.369951
Target:  5'- gGGGCGUcgaggucggcagcgGCCAgggcGuuGAGCAAcgcggccguGUUGGCg -3'
miRNA:   3'- -UCCGCG--------------CGGUa---CggCUCGUU---------CAACCG- -5'
26692 5' -57.9 NC_005808.1 + 11509 0.67 0.428211
Target:  5'- aGGGCaGCGCCugcGCUGGcgugaggcccuGCGAGcgGGCa -3'
miRNA:   3'- -UCCG-CGCGGua-CGGCU-----------CGUUCaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 12181 0.71 0.236915
Target:  5'- -cGCGCucaucGCCAUGCCGAGCGAaagcgUGGa -3'
miRNA:   3'- ucCGCG-----CGGUACGGCUCGUUca---ACCg -5'
26692 5' -57.9 NC_005808.1 + 12488 0.67 0.418603
Target:  5'- uGGCGCgGCCucaucGCCuGGGaCAAGggccgUGGCg -3'
miRNA:   3'- uCCGCG-CGGua---CGG-CUC-GUUCa----ACCG- -5'
26692 5' -57.9 NC_005808.1 + 12585 0.75 0.119169
Target:  5'- aGGGCGCgGCCGUGCaguugGAGCAcGaUGGCc -3'
miRNA:   3'- -UCCGCG-CGGUACGg----CUCGUuCaACCG- -5'
26692 5' -57.9 NC_005808.1 + 12707 0.72 0.201876
Target:  5'- cGGCcUGUCAUGCCGGGgGGGgggUGGUg -3'
miRNA:   3'- uCCGcGCGGUACGGCUCgUUCa--ACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.