miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26692 5' -57.9 NC_005808.1 + 190 0.66 0.447809
Target:  5'- uGGGCacCGUCAcgcUGCCGGGCGAcacGGCg -3'
miRNA:   3'- -UCCGc-GCGGU---ACGGCUCGUUcaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 790 0.66 0.488433
Target:  5'- cGGGCcgcuGCGCaaucGCCGucAGCAGGUggcugGGCu -3'
miRNA:   3'- -UCCG----CGCGgua-CGGC--UCGUUCAa----CCG- -5'
26692 5' -57.9 NC_005808.1 + 805 0.72 0.193324
Target:  5'- cGGCgacGCGCCGcgcccagcccuUGCCGAacgucggccagguggGCAGGUUGGUg -3'
miRNA:   3'- uCCG---CGCGGU-----------ACGGCU---------------CGUUCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 1085 0.66 0.488433
Target:  5'- cGGCGCGCguacuuCAUGuuG-GCGgcGGUaGGCg -3'
miRNA:   3'- uCCGCGCG------GUACggCuCGU--UCAaCCG- -5'
26692 5' -57.9 NC_005808.1 + 1713 0.68 0.338354
Target:  5'- uGGGC-CGgCGUGCCG-GCGAG--GGCg -3'
miRNA:   3'- -UCCGcGCgGUACGGCuCGUUCaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 2100 0.65 0.496767
Target:  5'- cAGGUGguCGCCGUGUCGucgguauagauuGCGccGUUGGCg -3'
miRNA:   3'- -UCCGC--GCGGUACGGCu-----------CGUu-CAACCG- -5'
26692 5' -57.9 NC_005808.1 + 2555 0.66 0.471967
Target:  5'- gGGGcCGCGCUcguaauUGCCGGcuuugaguucagcuuGCAaggccagcaGGUUGGCg -3'
miRNA:   3'- -UCC-GCGCGGu-----ACGGCU---------------CGU---------UCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 2758 0.69 0.289178
Target:  5'- cGGGCGUGCCGaccacUGCCGAcaccucgacguugcGCAGGU--GCg -3'
miRNA:   3'- -UCCGCGCGGU-----ACGGCU--------------CGUUCAacCG- -5'
26692 5' -57.9 NC_005808.1 + 2846 0.69 0.330158
Target:  5'- aAGGCcagccCGCCAaGCCGuAGC--GUUGGCa -3'
miRNA:   3'- -UCCGc----GCGGUaCGGC-UCGuuCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 3464 0.68 0.338354
Target:  5'- -cGCGCGCCccgAUGUucgCGGGCGAGUUcgacGGCc -3'
miRNA:   3'- ucCGCGCGG---UACG---GCUCGUUCAA----CCG- -5'
26692 5' -57.9 NC_005808.1 + 3722 0.72 0.207386
Target:  5'- uGGCGC-CCGUGCCGuucacGCcGGUggugGGCa -3'
miRNA:   3'- uCCGCGcGGUACGGCu----CGuUCAa---CCG- -5'
26692 5' -57.9 NC_005808.1 + 4021 0.7 0.24968
Target:  5'- cGGCcaccaGCGUCAUGCCGcGCGGGUcGaGCg -3'
miRNA:   3'- uCCG-----CGCGGUACGGCuCGUUCAaC-CG- -5'
26692 5' -57.9 NC_005808.1 + 4168 0.66 0.467894
Target:  5'- -uGCGCGCCGUgGUCGAgguguaGCcAGUgGGCg -3'
miRNA:   3'- ucCGCGCGGUA-CGGCU------CGuUCAaCCG- -5'
26692 5' -57.9 NC_005808.1 + 4181 0.72 0.213026
Target:  5'- cGGC-CGCCucgAUGgCGGGCAuGUUGGCc -3'
miRNA:   3'- uCCGcGCGG---UACgGCUCGUuCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 4390 0.68 0.381522
Target:  5'- cAGGCGcCGUCGcGCCGGGCcuuGAGcgugcGGCa -3'
miRNA:   3'- -UCCGC-GCGGUaCGGCUCG---UUCaa---CCG- -5'
26692 5' -57.9 NC_005808.1 + 4539 0.66 0.448802
Target:  5'- uGGGCG-GUCGUGCCGccgcggaacuggacuGCGguacucauauGGUUGGCu -3'
miRNA:   3'- -UCCGCgCGGUACGGCu--------------CGU----------UCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 4683 0.66 0.451788
Target:  5'- -aGCGCGCCGgaUagcgcggcgagaaugGCCG-GCAAGUuguUGGCu -3'
miRNA:   3'- ucCGCGCGGU--A---------------CGGCuCGUUCA---ACCG- -5'
26692 5' -57.9 NC_005808.1 + 5121 0.66 0.487396
Target:  5'- cGGCugGCGCCguugaacugcaacGUGCCGcGCAGGc-GGCc -3'
miRNA:   3'- uCCG--CGCGG-------------UACGGCuCGUUCaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 5804 0.69 0.291388
Target:  5'- cGGCaGCGCCAgcggauaGUCGGGCA---UGGCg -3'
miRNA:   3'- uCCG-CGCGGUa------CGGCUCGUucaACCG- -5'
26692 5' -57.9 NC_005808.1 + 6718 0.69 0.313425
Target:  5'- uGGGCGCGCaucUGCuUGAGCAcggcgucGGccUUGGCg -3'
miRNA:   3'- -UCCGCGCGgu-ACG-GCUCGU-------UC--AACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.