miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26692 5' -57.9 NC_005808.1 + 22589 1.12 0.000208
Target:  5'- cAGGCGCGCCAUGCCGAGCAAGUUGGCg -3'
miRNA:   3'- -UCCGCGCGGUACGGCUCGUUCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 12585 0.75 0.119169
Target:  5'- aGGGCGCgGCCGUGCaguugGAGCAcGaUGGCc -3'
miRNA:   3'- -UCCGCG-CGGUACGg----CUCGUuCaACCG- -5'
26692 5' -57.9 NC_005808.1 + 13925 0.75 0.122596
Target:  5'- uGGCGCGCCGcGCUG-GCGAGgccgccGGCa -3'
miRNA:   3'- uCCGCGCGGUaCGGCuCGUUCaa----CCG- -5'
26692 5' -57.9 NC_005808.1 + 29974 0.74 0.141142
Target:  5'- cGGCaGCaGCgAUGCCGAGCGcGUcGGCg -3'
miRNA:   3'- uCCG-CG-CGgUACGGCUCGUuCAaCCG- -5'
26692 5' -57.9 NC_005808.1 + 26113 0.73 0.16403
Target:  5'- -cGUGCGCCAUGCCG-GCAuguGUucgucgcggcagauuUGGCg -3'
miRNA:   3'- ucCGCGCGGUACGGCuCGUu--CA---------------ACCG- -5'
26692 5' -57.9 NC_005808.1 + 26858 0.73 0.171427
Target:  5'- gAGGUGCGgUAUGUCGAGCGca-UGGCc -3'
miRNA:   3'- -UCCGCGCgGUACGGCUCGUucaACCG- -5'
26692 5' -57.9 NC_005808.1 + 16064 0.73 0.181092
Target:  5'- aGGGCgGCGCCAUGCUGAaaaccgUGGCg -3'
miRNA:   3'- -UCCG-CGCGGUACGGCUcguucaACCG- -5'
26692 5' -57.9 NC_005808.1 + 35514 0.73 0.181092
Target:  5'- uGGGCGCGCCGUggguagGCCGcGGCGucaugaAGUaccUGGCc -3'
miRNA:   3'- -UCCGCGCGGUA------CGGC-UCGU------UCA---ACCG- -5'
26692 5' -57.9 NC_005808.1 + 26032 0.72 0.184587
Target:  5'- cGGCGCGUCGcGCUacaacgucuauaagGAGCAAGgcGGCc -3'
miRNA:   3'- uCCGCGCGGUaCGG--------------CUCGUUCaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 12934 0.72 0.191236
Target:  5'- cGGcCGCGCCcUGCUGGGCAAc--GGCu -3'
miRNA:   3'- uCC-GCGCGGuACGGCUCGUUcaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 805 0.72 0.193324
Target:  5'- cGGCgacGCGCCGcgcccagcccuUGCCGAacgucggccagguggGCAGGUUGGUg -3'
miRNA:   3'- uCCG---CGCGGU-----------ACGGCU---------------CGUUCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 24184 0.72 0.201876
Target:  5'- cGGCGUGuCCAUGagcgCGAGCAcGUaGGCg -3'
miRNA:   3'- uCCGCGC-GGUACg---GCUCGUuCAaCCG- -5'
26692 5' -57.9 NC_005808.1 + 13169 0.72 0.201876
Target:  5'- uGGGCGCGaCGUG-CGAGCGcGUgGGCa -3'
miRNA:   3'- -UCCGCGCgGUACgGCUCGUuCAaCCG- -5'
26692 5' -57.9 NC_005808.1 + 12707 0.72 0.201876
Target:  5'- cGGCcUGUCAUGCCGGGgGGGgggUGGUg -3'
miRNA:   3'- uCCGcGCGGUACGGCUCgUUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 3722 0.72 0.207386
Target:  5'- uGGCGC-CCGUGCCGuucacGCcGGUggugGGCa -3'
miRNA:   3'- uCCGCGcGGUACGGCu----CGuUCAa---CCG- -5'
26692 5' -57.9 NC_005808.1 + 25801 0.72 0.209626
Target:  5'- cGGCGCGCUcgGuaucguugaucugcaCCGGGCcgccGUUGGCg -3'
miRNA:   3'- uCCGCGCGGuaC---------------GGCUCGuu--CAACCG- -5'
26692 5' -57.9 NC_005808.1 + 4181 0.72 0.213026
Target:  5'- cGGC-CGCCucgAUGgCGGGCAuGUUGGCc -3'
miRNA:   3'- uCCGcGCGG---UACgGCUCGUuCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 33927 0.71 0.218797
Target:  5'- uGGGCGCGCagcaGCCGcugcacacAGCGAGUacGGCg -3'
miRNA:   3'- -UCCGCGCGgua-CGGC--------UCGUUCAa-CCG- -5'
26692 5' -57.9 NC_005808.1 + 25486 0.71 0.23074
Target:  5'- aGGGCGCGCuCGUGCUuGGuCAGGgucaGGCc -3'
miRNA:   3'- -UCCGCGCG-GUACGGcUC-GUUCaa--CCG- -5'
26692 5' -57.9 NC_005808.1 + 24598 0.71 0.236915
Target:  5'- cGGCGUGuCCuUGCCGGGguAGgucagcGGCa -3'
miRNA:   3'- uCCGCGC-GGuACGGCUCguUCaa----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.