miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26692 5' -57.9 NC_005808.1 + 14425 0.68 0.338354
Target:  5'- cAGGCGCGCC-UGC--GGCAccguGUUGGg -3'
miRNA:   3'- -UCCGCGCGGuACGgcUCGUu---CAACCg -5'
26692 5' -57.9 NC_005808.1 + 13302 0.7 0.284075
Target:  5'- -aGCGCGCCGggGCCG-GCGuuguAGgcGGCg -3'
miRNA:   3'- ucCGCGCGGUa-CGGCuCGU----UCaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 39028 0.69 0.298847
Target:  5'- cGGCGCGUCGcugaaauuuaUGCgGcGCG-GUUGGCg -3'
miRNA:   3'- uCCGCGCGGU----------ACGgCuCGUuCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 40572 0.69 0.306454
Target:  5'- gAGGCG-GCCGguaUGCCGGuGCuGG-UGGCg -3'
miRNA:   3'- -UCCGCgCGGU---ACGGCU-CGuUCaACCG- -5'
26692 5' -57.9 NC_005808.1 + 23538 0.69 0.322109
Target:  5'- cGGCGCacgcggucgaugGCCucgGCCGAcaucgccgGCAGGUgcgGGCg -3'
miRNA:   3'- uCCGCG------------CGGua-CGGCU--------CGUUCAa--CCG- -5'
26692 5' -57.9 NC_005808.1 + 2846 0.69 0.330158
Target:  5'- aAGGCcagccCGCCAaGCCGuAGC--GUUGGCa -3'
miRNA:   3'- -UCCGc----GCGGUaCGGC-UCGuuCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 12842 0.69 0.330158
Target:  5'- -uGCGCGCCAacucGuCCGGGCu-GUUGGUc -3'
miRNA:   3'- ucCGCGCGGUa---C-GGCUCGuuCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 1713 0.68 0.338354
Target:  5'- uGGGC-CGgCGUGCCG-GCGAG--GGCg -3'
miRNA:   3'- -UCCGcGCgGUACGGCuCGUUCaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 3464 0.68 0.338354
Target:  5'- -cGCGCGCCccgAUGUucgCGGGCGAGUUcgacGGCc -3'
miRNA:   3'- ucCGCGCGG---UACG---GCUCGUUCAA----CCG- -5'
26692 5' -57.9 NC_005808.1 + 20023 0.7 0.25895
Target:  5'- uGGCGCGCCugcAucacaggcagcaucuUGUCGAGCAccAGUUGcGCc -3'
miRNA:   3'- uCCGCGCGG---U---------------ACGGCUCGU--UCAAC-CG- -5'
26692 5' -57.9 NC_005808.1 + 20213 0.7 0.256273
Target:  5'- uGGCaGCGCCcgcgGCCG-GCu-GUUGGCc -3'
miRNA:   3'- uCCG-CGCGGua--CGGCuCGuuCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 25758 0.7 0.24968
Target:  5'- uGGGCGCGC--UGCUGGGCGGc--GGCa -3'
miRNA:   3'- -UCCGCGCGguACGGCUCGUUcaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 805 0.72 0.193324
Target:  5'- cGGCgacGCGCCGcgcccagcccuUGCCGAacgucggccagguggGCAGGUUGGUg -3'
miRNA:   3'- uCCG---CGCGGU-----------ACGGCU---------------CGUUCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 24184 0.72 0.201876
Target:  5'- cGGCGUGuCCAUGagcgCGAGCAcGUaGGCg -3'
miRNA:   3'- uCCGCGC-GGUACg---GCUCGUuCAaCCG- -5'
26692 5' -57.9 NC_005808.1 + 3722 0.72 0.207386
Target:  5'- uGGCGC-CCGUGCCGuucacGCcGGUggugGGCa -3'
miRNA:   3'- uCCGCGcGGUACGGCu----CGuUCAa---CCG- -5'
26692 5' -57.9 NC_005808.1 + 25801 0.72 0.209626
Target:  5'- cGGCGCGCUcgGuaucguugaucugcaCCGGGCcgccGUUGGCg -3'
miRNA:   3'- uCCGCGCGGuaC---------------GGCUCGuu--CAACCG- -5'
26692 5' -57.9 NC_005808.1 + 33927 0.71 0.218797
Target:  5'- uGGGCGCGCagcaGCCGcugcacacAGCGAGUacGGCg -3'
miRNA:   3'- -UCCGCGCGgua-CGGC--------UCGUUCAa-CCG- -5'
26692 5' -57.9 NC_005808.1 + 25486 0.71 0.23074
Target:  5'- aGGGCGCGCuCGUGCUuGGuCAGGgucaGGCc -3'
miRNA:   3'- -UCCGCGCG-GUACGGcUC-GUUCaa--CCG- -5'
26692 5' -57.9 NC_005808.1 + 24598 0.71 0.236915
Target:  5'- cGGCGUGuCCuUGCCGGGguAGgucagcGGCa -3'
miRNA:   3'- uCCGCGC-GGuACGGCUCguUCaa----CCG- -5'
26692 5' -57.9 NC_005808.1 + 4021 0.7 0.24968
Target:  5'- cGGCcaccaGCGUCAUGCCGcGCGGGUcGaGCg -3'
miRNA:   3'- uCCG-----CGCGGUACGGCuCGUUCAaC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.