miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26692 5' -57.9 NC_005808.1 + 22589 1.12 0.000208
Target:  5'- cAGGCGCGCCAUGCCGAGCAAGUUGGCg -3'
miRNA:   3'- -UCCGCGCGGUACGGCUCGUUCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 31221 0.69 0.298847
Target:  5'- cAGGU-CGCCAccgaggUGCCGGGCGAGcaGGUc -3'
miRNA:   3'- -UCCGcGCGGU------ACGGCUCGUUCaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 6718 0.69 0.313425
Target:  5'- uGGGCGCGCaucUGCuUGAGCAcggcgucGGccUUGGCg -3'
miRNA:   3'- -UCCGCGCGgu-ACG-GCUCGU-------UC--AACCG- -5'
26692 5' -57.9 NC_005808.1 + 2100 0.65 0.496767
Target:  5'- cAGGUGguCGCCGUGUCGucgguauagauuGCGccGUUGGCg -3'
miRNA:   3'- -UCCGC--GCGGUACGGCu-----------CGUu-CAACCG- -5'
26692 5' -57.9 NC_005808.1 + 26858 0.73 0.171427
Target:  5'- gAGGUGCGgUAUGUCGAGCGca-UGGCc -3'
miRNA:   3'- -UCCGCGCgGUACGGCUCGUucaACCG- -5'
26692 5' -57.9 NC_005808.1 + 16064 0.73 0.181092
Target:  5'- aGGGCgGCGCCAUGCUGAaaaccgUGGCg -3'
miRNA:   3'- -UCCG-CGCGGUACGGCUcguucaACCG- -5'
26692 5' -57.9 NC_005808.1 + 26032 0.72 0.184587
Target:  5'- cGGCGCGUCGcGCUacaacgucuauaagGAGCAAGgcGGCc -3'
miRNA:   3'- uCCGCGCGGUaCGG--------------CUCGUUCaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 12934 0.72 0.191236
Target:  5'- cGGcCGCGCCcUGCUGGGCAAc--GGCu -3'
miRNA:   3'- uCC-GCGCGGuACGGCUCGUUcaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 4181 0.72 0.213026
Target:  5'- cGGC-CGCCucgAUGgCGGGCAuGUUGGCc -3'
miRNA:   3'- uCCGcGCGG---UACgGCUCGUuCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 5804 0.69 0.291388
Target:  5'- cGGCaGCGCCAgcggauaGUCGGGCA---UGGCg -3'
miRNA:   3'- uCCG-CGCGGUa------CGGCUCGUucaACCG- -5'
26692 5' -57.9 NC_005808.1 + 14819 0.7 0.260972
Target:  5'- cGGCGCGCgcuucguguaCGUGuCCGAGCcggacgagggcagcGAGUUGcGCg -3'
miRNA:   3'- uCCGCGCG----------GUAC-GGCUCG--------------UUCAAC-CG- -5'
26692 5' -57.9 NC_005808.1 + 13169 0.72 0.201876
Target:  5'- uGGGCGCGaCGUG-CGAGCGcGUgGGCa -3'
miRNA:   3'- -UCCGCGCgGUACgGCUCGUuCAaCCG- -5'
26692 5' -57.9 NC_005808.1 + 12585 0.75 0.119169
Target:  5'- aGGGCGCgGCCGUGCaguugGAGCAcGaUGGCc -3'
miRNA:   3'- -UCCGCG-CGGUACGg----CUCGUuCaACCG- -5'
26692 5' -57.9 NC_005808.1 + 33380 0.7 0.281909
Target:  5'- cGGGCGCGCCgcagaacGUgcgccgcgccGCCGAGCAGGccaacgucgacGGCg -3'
miRNA:   3'- -UCCGCGCGG-------UA----------CGGCUCGUUCaa---------CCG- -5'
26692 5' -57.9 NC_005808.1 + 13925 0.75 0.122596
Target:  5'- uGGCGCGCCGcGCUG-GCGAGgccgccGGCa -3'
miRNA:   3'- uCCGCGCGGUaCGGCuCGUUCaa----CCG- -5'
26692 5' -57.9 NC_005808.1 + 12707 0.72 0.201876
Target:  5'- cGGCcUGUCAUGCCGGGgGGGgggUGGUg -3'
miRNA:   3'- uCCGcGCGGUACGGCUCgUUCa--ACCG- -5'
26692 5' -57.9 NC_005808.1 + 2758 0.69 0.289178
Target:  5'- cGGGCGUGCCGaccacUGCCGAcaccucgacguugcGCAGGU--GCg -3'
miRNA:   3'- -UCCGCGCGGU-----ACGGCU--------------CGUUCAacCG- -5'
26692 5' -57.9 NC_005808.1 + 8986 0.69 0.306453
Target:  5'- cGGUG-GCCGUGCCGccAGCGG--UGGCc -3'
miRNA:   3'- uCCGCgCGGUACGGC--UCGUUcaACCG- -5'
26692 5' -57.9 NC_005808.1 + 29974 0.74 0.141142
Target:  5'- cGGCaGCaGCgAUGCCGAGCGcGUcGGCg -3'
miRNA:   3'- uCCG-CG-CGgUACGGCUCGUuCAaCCG- -5'
26692 5' -57.9 NC_005808.1 + 35514 0.73 0.181092
Target:  5'- uGGGCGCGCCGUggguagGCCGcGGCGucaugaAGUaccUGGCc -3'
miRNA:   3'- -UCCGCGCGGUA------CGGC-UCGU------UCA---ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.