miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26692 5' -57.9 NC_005808.1 + 42387 0.68 0.355186
Target:  5'- gAGGUGCGCCAguucGCCGugucgcccGGCAGcGUgacGGUg -3'
miRNA:   3'- -UCCGCGCGGUa---CGGC--------UCGUU-CAa--CCG- -5'
26692 5' -57.9 NC_005808.1 + 40572 0.69 0.306454
Target:  5'- gAGGCG-GCCGguaUGCCGGuGCuGG-UGGCg -3'
miRNA:   3'- -UCCGCgCGGU---ACGGCU-CGuUCaACCG- -5'
26692 5' -57.9 NC_005808.1 + 40345 0.67 0.399789
Target:  5'- uGGuGCGCGUCGaacUGCCGGcCAAGgcccGGCg -3'
miRNA:   3'- -UC-CGCGCGGU---ACGGCUcGUUCaa--CCG- -5'
26692 5' -57.9 NC_005808.1 + 39028 0.69 0.298847
Target:  5'- cGGCGCGUCGcugaaauuuaUGCgGcGCG-GUUGGCg -3'
miRNA:   3'- uCCGCGCGGU----------ACGgCuCGUuCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 37806 0.68 0.337528
Target:  5'- -cGCaGCGCCAgccggcgUGCUGGGCGcAGUgugGGCg -3'
miRNA:   3'- ucCG-CGCGGU-------ACGGCUCGU-UCAa--CCG- -5'
26692 5' -57.9 NC_005808.1 + 37212 0.69 0.330158
Target:  5'- cGGCGacgugagcacCGUCAgcacgcaccUGUCGAGCAuGUUGGCu -3'
miRNA:   3'- uCCGC----------GCGGU---------ACGGCUCGUuCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 36245 0.67 0.437947
Target:  5'- -aGCGCcccgGCCuucggGCCGGGCGcuUUGGCu -3'
miRNA:   3'- ucCGCG----CGGua---CGGCUCGUucAACCG- -5'
26692 5' -57.9 NC_005808.1 + 35514 0.73 0.181092
Target:  5'- uGGGCGCGCCGUggguagGCCGcGGCGucaugaAGUaccUGGCc -3'
miRNA:   3'- -UCCGCGCGGUA------CGGC-UCGU------UCA---ACCG- -5'
26692 5' -57.9 NC_005808.1 + 35362 0.66 0.464852
Target:  5'- cGGCccGCGCCAgugGCCGAaguuGCAgggcuucaucacgcAGUccgaUGGCa -3'
miRNA:   3'- uCCG--CGCGGUa--CGGCU----CGU--------------UCA----ACCG- -5'
26692 5' -57.9 NC_005808.1 + 34548 0.68 0.338354
Target:  5'- uGGGCGCGCguCAUGgaCGgcGGCAAGgacGGCg -3'
miRNA:   3'- -UCCGCGCG--GUACg-GC--UCGUUCaa-CCG- -5'
26692 5' -57.9 NC_005808.1 + 34526 0.67 0.43209
Target:  5'- cGuGCGCGCCuugggcggugaacugAUgGUCGAGCAgcGGUUGaGCg -3'
miRNA:   3'- uC-CGCGCGG---------------UA-CGGCUCGU--UCAAC-CG- -5'
26692 5' -57.9 NC_005808.1 + 33927 0.71 0.218797
Target:  5'- uGGGCGCGCagcaGCCGcugcacacAGCGAGUacGGCg -3'
miRNA:   3'- -UCCGCGCGgua-CGGC--------UCGUUCAa-CCG- -5'
26692 5' -57.9 NC_005808.1 + 33590 0.66 0.451788
Target:  5'- uGGUGCGCCGccUGCUGgaagcgcccccgcgcGGCGAGgaaaucgaGGCg -3'
miRNA:   3'- uCCGCGCGGU--ACGGC---------------UCGUUCaa------CCG- -5'
26692 5' -57.9 NC_005808.1 + 33380 0.7 0.281909
Target:  5'- cGGGCGCGCCgcagaacGUgcgccgcgccGCCGAGCAGGccaacgucgacGGCg -3'
miRNA:   3'- -UCCGCGCGG-------UA----------CGGCUCGUUCaa---------CCG- -5'
26692 5' -57.9 NC_005808.1 + 33291 0.66 0.457792
Target:  5'- cGuGCGcCGCCAggucGCCGAGgAAGUcaaUGcGCa -3'
miRNA:   3'- uC-CGC-GCGGUa---CGGCUCgUUCA---AC-CG- -5'
26692 5' -57.9 NC_005808.1 + 32148 0.67 0.399788
Target:  5'- aGGGCGaCGCCAagggcgccauUGCCaAGCu-GUUGGa -3'
miRNA:   3'- -UCCGC-GCGGU----------ACGGcUCGuuCAACCg -5'
26692 5' -57.9 NC_005808.1 + 31856 0.67 0.390585
Target:  5'- cGaGCGCGCCcuUGgCGAGCAGcaaGGCg -3'
miRNA:   3'- uC-CGCGCGGu-ACgGCUCGUUcaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 31221 0.69 0.298847
Target:  5'- cAGGU-CGCCAccgaggUGCCGGGCGAGcaGGUc -3'
miRNA:   3'- -UCCGcGCGGU------ACGGCUCGUUCaaCCG- -5'
26692 5' -57.9 NC_005808.1 + 30123 0.67 0.422431
Target:  5'- gAGGcCGCGCCAgaacacgccGCCGGccugcaccGCGucggacaucagcggcAGUUGGCg -3'
miRNA:   3'- -UCC-GCGCGGUa--------CGGCU--------CGU---------------UCAACCG- -5'
26692 5' -57.9 NC_005808.1 + 29974 0.74 0.141142
Target:  5'- cGGCaGCaGCgAUGCCGAGCGcGUcGGCg -3'
miRNA:   3'- uCCG-CG-CGgUACGGCUCGUuCAaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.