Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26693 | 3' | -58.3 | NC_005808.1 | + | 2353 | 0.66 | 0.422829 |
Target: 5'- cGAUCUGUUGCUGG-GCaaacGGCAACGGu -3' miRNA: 3'- -UUGGGCGAUGACCaCGc---CCGUUGCUg -5' |
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26693 | 3' | -58.3 | NC_005808.1 | + | 4354 | 0.67 | 0.376428 |
Target: 5'- uGGCCguugCGUUGCcGGUGCGcgugaaGGCGACGGCc -3' miRNA: 3'- -UUGG----GCGAUGaCCACGC------CCGUUGCUG- -5' |
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26693 | 3' | -58.3 | NC_005808.1 | + | 6340 | 0.68 | 0.333585 |
Target: 5'- gAACUCGCc-CUGGUGCgucuGGGUGGCGAa -3' miRNA: 3'- -UUGGGCGauGACCACG----CCCGUUGCUg -5' |
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26693 | 3' | -58.3 | NC_005808.1 | + | 8553 | 0.69 | 0.287038 |
Target: 5'- cAGCCgCGCcgAUg---GCGGGCAGCGACa -3' miRNA: 3'- -UUGG-GCGa-UGaccaCGCCCGUUGCUG- -5' |
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26693 | 3' | -58.3 | NC_005808.1 | + | 9315 | 0.66 | 0.452266 |
Target: 5'- cGACCUgGCgGCgcacgucGGcgcgGCGGGCGGCGGCa -3' miRNA: 3'- -UUGGG-CGaUGa------CCa---CGCCCGUUGCUG- -5' |
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26693 | 3' | -58.3 | NC_005808.1 | + | 13539 | 0.66 | 0.436425 |
Target: 5'- uGACCCGCUGaUGGccuacgagccgccgGUGGGUAuCGACc -3' miRNA: 3'- -UUGGGCGAUgACCa-------------CGCCCGUuGCUG- -5' |
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26693 | 3' | -58.3 | NC_005808.1 | + | 14413 | 0.77 | 0.075882 |
Target: 5'- aGGCgCCGCaccUGCUGGgcGUGGGCAACGGCg -3' miRNA: 3'- -UUG-GGCG---AUGACCa-CGCCCGUUGCUG- -5' |
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26693 | 3' | -58.3 | NC_005808.1 | + | 15049 | 0.68 | 0.325457 |
Target: 5'- uGCCCGCgu-UGaUGCGGGCAAuguuCGACu -3' miRNA: 3'- uUGGGCGaugACcACGCCCGUU----GCUG- -5' |
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26693 | 3' | -58.3 | NC_005808.1 | + | 15129 | 0.71 | 0.22703 |
Target: 5'- aGGCCCGaccccaUGCUGGcgGCggaugcgcccaGGGCGACGGCu -3' miRNA: 3'- -UUGGGCg-----AUGACCa-CG-----------CCCGUUGCUG- -5' |
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26693 | 3' | -58.3 | NC_005808.1 | + | 17521 | 0.66 | 0.462324 |
Target: 5'- gGGCgCGCUgcGCUGGgugGCGaugcugcccgauGGUAACGGCg -3' miRNA: 3'- -UUGgGCGA--UGACCa--CGC------------CCGUUGCUG- -5' |
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26693 | 3' | -58.3 | NC_005808.1 | + | 18536 | 0.71 | 0.198512 |
Target: 5'- --gCCGCUACU-GUGCGcGGCAugGAa -3' miRNA: 3'- uugGGCGAUGAcCACGC-CCGUugCUg -5' |
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26693 | 3' | -58.3 | NC_005808.1 | + | 20086 | 0.71 | 0.215227 |
Target: 5'- uGCUCGCUGCgGGgaugaugGCGGGCA-UGACc -3' miRNA: 3'- uUGGGCGAUGaCCa------CGCCCGUuGCUG- -5' |
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26693 | 3' | -58.3 | NC_005808.1 | + | 22313 | 1.07 | 0.000379 |
Target: 5'- cAACCCGCUACUGGUGCGGGCAACGACg -3' miRNA: 3'- -UUGGGCGAUGACCACGCCCGUUGCUG- -5' |
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26693 | 3' | -58.3 | NC_005808.1 | + | 23176 | 0.7 | 0.25228 |
Target: 5'- cGGCCCcCUGCUGGUGCGacaGCAGCa-- -3' miRNA: 3'- -UUGGGcGAUGACCACGCc--CGUUGcug -5' |
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26693 | 3' | -58.3 | NC_005808.1 | + | 23564 | 0.72 | 0.168457 |
Target: 5'- cGACaUCGCcgGCaGGUGCGGGCGggggGCGACg -3' miRNA: 3'- -UUG-GGCGa-UGaCCACGCCCGU----UGCUG- -5' |
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26693 | 3' | -58.3 | NC_005808.1 | + | 25759 | 0.77 | 0.082802 |
Target: 5'- gGGCgCGCUGCUGG-GCGGcgGCAACGAUg -3' miRNA: 3'- -UUGgGCGAUGACCaCGCC--CGUUGCUG- -5' |
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26693 | 3' | -58.3 | NC_005808.1 | + | 30369 | 0.66 | 0.461313 |
Target: 5'- gAACCCGCcgcUGCUGuaggGUGGGUcggugauAACGGCg -3' miRNA: 3'- -UUGGGCG---AUGACca--CGCCCG-------UUGCUG- -5' |
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26693 | 3' | -58.3 | NC_005808.1 | + | 31086 | 0.69 | 0.294426 |
Target: 5'- gGugCCGCUGCUcaccucGGUGCaGGcCGGCGAg -3' miRNA: 3'- -UugGGCGAUGA------CCACGcCC-GUUGCUg -5' |
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26693 | 3' | -58.3 | NC_005808.1 | + | 32116 | 0.67 | 0.393653 |
Target: 5'- cGGCCCGUUcggGCcGGUGCugcgcgacuuccaGGGCGACGcCa -3' miRNA: 3'- -UUGGGCGA---UGaCCACG-------------CCCGUUGCuG- -5' |
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26693 | 3' | -58.3 | NC_005808.1 | + | 32461 | 0.68 | 0.325457 |
Target: 5'- cGCCCcCUACUgccgaGGUGgGGGCGGcCGAUg -3' miRNA: 3'- uUGGGcGAUGA-----CCACgCCCGUU-GCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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