Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26693 | 5' | -56 | NC_005808.1 | + | 32444 | 0.67 | 0.516235 |
Target: 5'- gGCAGCGACuGCCccuacGCCCccuacugccgagguGGGGGCGGc -3' miRNA: 3'- -CGUCGUUGuCGGc----UGGG--------------UCCUCGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 33013 | 0.66 | 0.574353 |
Target: 5'- cCAGCGACAGCaucaCGAUgCUGGGcGGCAAGu -3' miRNA: 3'- cGUCGUUGUCG----GCUG-GGUCC-UCGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 33950 | 0.66 | 0.563244 |
Target: 5'- aCAGCGaguACGGCgCGGCCUGGG-GCGu- -3' miRNA: 3'- cGUCGU---UGUCG-GCUGGGUCCuCGUuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 35340 | 0.66 | 0.551091 |
Target: 5'- aGCAGCAguucaagaccuggGCGGCCGACaucgCCGaGGGUGAGc -3' miRNA: 3'- -CGUCGU-------------UGUCGGCUG----GGUcCUCGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 36217 | 0.71 | 0.28878 |
Target: 5'- cGCcGCGGCGGCCGACCU-GGuGUAAc -3' miRNA: 3'- -CGuCGUUGUCGGCUGGGuCCuCGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 37452 | 0.69 | 0.397972 |
Target: 5'- aGCAGCGACGGCCG-CCUGcGcGGCAc- -3' miRNA: 3'- -CGUCGUUGUCGGCuGGGU-CcUCGUuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 37644 | 0.69 | 0.397972 |
Target: 5'- aGCAGCGcgauacGCGGCUGcaucguggcGCCCGaGGGCAAGa -3' miRNA: 3'- -CGUCGU------UGUCGGC---------UGGGUcCUCGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 37806 | 0.7 | 0.361694 |
Target: 5'- cGCAGCGcCAGCCGGCgugCUGGGcGCAGu -3' miRNA: 3'- -CGUCGUuGUCGGCUG---GGUCCuCGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 37979 | 0.66 | 0.584394 |
Target: 5'- gGCAGCGcgggccaacauugGCcuGGCUGACCUGGGcGGCAu- -3' miRNA: 3'- -CGUCGU-------------UG--UCGGCUGGGUCC-UCGUuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 39672 | 0.69 | 0.379543 |
Target: 5'- cGCGGUGugGGCCGGCaUGGGAauggGCAAGa -3' miRNA: 3'- -CGUCGUugUCGGCUGgGUCCU----CGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 41401 | 0.7 | 0.370545 |
Target: 5'- gGCGGUuauuccaacAACccGGCCGACCCcGGcGGCGAGa -3' miRNA: 3'- -CGUCG---------UUG--UCGGCUGGGuCC-UCGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 41557 | 0.66 | 0.551091 |
Target: 5'- cGCGGCGACAugcugccGCCGGCCguGGccuucCAGGu -3' miRNA: 3'- -CGUCGUUGU-------CGGCUGGguCCuc---GUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 42071 | 0.66 | 0.563244 |
Target: 5'- cGCGGUGACGGCCGAacagaaCCGccuGCAAGc -3' miRNA: 3'- -CGUCGUUGUCGGCUg-----GGUccuCGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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