miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26693 5' -56 NC_005808.1 + 16224 0.66 0.574353
Target:  5'- -gAGCAGCAGCa-ACUCGGuGAGCGGc -3'
miRNA:   3'- cgUCGUUGUCGgcUGGGUC-CUCGUUc -5'
26693 5' -56 NC_005808.1 + 16322 0.66 0.596712
Target:  5'- cGCGcGCGAUgcgcgAGCCGACC-AGGccGGCGGGu -3'
miRNA:   3'- -CGU-CGUUG-----UCGGCUGGgUCC--UCGUUC- -5'
26693 5' -56 NC_005808.1 + 16643 0.75 0.178274
Target:  5'- uGguGCAGguGCCGGCCgacgaGGGAGCGGa -3'
miRNA:   3'- -CguCGUUguCGGCUGGg----UCCUCGUUc -5'
26693 5' -56 NC_005808.1 + 17095 0.66 0.596712
Target:  5'- cGCGGUucuCGGCCGGgCCuuGGGGCu-- -3'
miRNA:   3'- -CGUCGuu-GUCGGCUgGGu-CCUCGuuc -5'
26693 5' -56 NC_005808.1 + 18582 0.69 0.405503
Target:  5'- cGCGGUGACGGCCuGGCCguccgagacuuGGAGCAGu -3'
miRNA:   3'- -CGUCGUUGUCGG-CUGGgu---------CCUCGUUc -5'
26693 5' -56 NC_005808.1 + 18829 0.66 0.596712
Target:  5'- cGUAGCcGCGGCgcauCGGCCCGGuGGCGc- -3'
miRNA:   3'- -CGUCGuUGUCG----GCUGGGUCcUCGUuc -5'
26693 5' -56 NC_005808.1 + 19597 0.72 0.253519
Target:  5'- cGCAGCAGCAgGCCGACCa---GGCGAa -3'
miRNA:   3'- -CGUCGUUGU-CGGCUGGguccUCGUUc -5'
26693 5' -56 NC_005808.1 + 21873 0.67 0.519467
Target:  5'- cCAGCAGCAuGUCGGCCUgauGGGGUg-- -3'
miRNA:   3'- cGUCGUUGU-CGGCUGGGu--CCUCGuuc -5'
26693 5' -56 NC_005808.1 + 22347 1.11 0.000346
Target:  5'- aGCAGCAACAGCCGACCCAGGAGCAAGg -3'
miRNA:   3'- -CGUCGUUGUCGGCUGGGUCCUCGUUC- -5'
26693 5' -56 NC_005808.1 + 22381 0.69 0.388686
Target:  5'- -aGGcCAACAGCCGGCCgCGGGcGCu-- -3'
miRNA:   3'- cgUC-GUUGUCGGCUGG-GUCCuCGuuc -5'
26693 5' -56 NC_005808.1 + 23111 0.66 0.552193
Target:  5'- --cGCAGCGGCCuGCCCAccggcaccuGGcGCAAGc -3'
miRNA:   3'- cguCGUUGUCGGcUGGGU---------CCuCGUUC- -5'
26693 5' -56 NC_005808.1 + 24076 0.66 0.552193
Target:  5'- aCAGUAGCGG-CGACCgCGcGGGGCAc- -3'
miRNA:   3'- cGUCGUUGUCgGCUGG-GU-CCUCGUuc -5'
26693 5' -56 NC_005808.1 + 24562 0.66 0.574353
Target:  5'- cGCGGCGAUggcgaGGCCGGCCaCGGucGGGCc-- -3'
miRNA:   3'- -CGUCGUUG-----UCGGCUGG-GUC--CUCGuuc -5'
26693 5' -56 NC_005808.1 + 26830 0.66 0.585512
Target:  5'- gGCAgGCuGC-GCCGcCCCGauGGAGCGGGc -3'
miRNA:   3'- -CGU-CGuUGuCGGCuGGGU--CCUCGUUC- -5'
26693 5' -56 NC_005808.1 + 27791 0.68 0.466767
Target:  5'- -aGGCAGC-GCCG-CCgAGGuGCAGGu -3'
miRNA:   3'- cgUCGUUGuCGGCuGGgUCCuCGUUC- -5'
26693 5' -56 NC_005808.1 + 28016 0.66 0.541207
Target:  5'- aGCGGau-CGGCCGccggcaucaGCCCgguAGGGGCGGGu -3'
miRNA:   3'- -CGUCguuGUCGGC---------UGGG---UCCUCGUUC- -5'
26693 5' -56 NC_005808.1 + 28964 0.71 0.311728
Target:  5'- uGCAGCGACAuGCCGACuuucagCCAGGuGUc-- -3'
miRNA:   3'- -CGUCGUUGU-CGGCUG------GGUCCuCGuuc -5'
26693 5' -56 NC_005808.1 + 29808 0.67 0.527039
Target:  5'- cGCAcCAGCcugucugaGGCCGAcuucaagcauuuuuCCCAGGAGCGc- -3'
miRNA:   3'- -CGUcGUUG--------UCGGCU--------------GGGUCCUCGUuc -5'
26693 5' -56 NC_005808.1 + 31440 0.72 0.274232
Target:  5'- cGCAcGCAacgugcGCAGgCGGCCCAGcAGCAGGc -3'
miRNA:   3'- -CGU-CGU------UGUCgGCUGGGUCcUCGUUC- -5'
26693 5' -56 NC_005808.1 + 32270 0.69 0.4074
Target:  5'- cGCAGCGACGGCuaCGGCCUGGcGAaacugGCGAa -3'
miRNA:   3'- -CGUCGUUGUCG--GCUGGGUC-CU-----CGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.