Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26693 | 5' | -56 | NC_005808.1 | + | 18582 | 0.69 | 0.405503 |
Target: 5'- cGCGGUGACGGCCuGGCCguccgagacuuGGAGCAGu -3' miRNA: 3'- -CGUCGUUGUCGG-CUGGgu---------CCUCGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 32444 | 0.67 | 0.516235 |
Target: 5'- gGCAGCGACuGCCccuacGCCCccuacugccgagguGGGGGCGGc -3' miRNA: 3'- -CGUCGUUGuCGGc----UGGG--------------UCCUCGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 6591 | 0.67 | 0.519467 |
Target: 5'- cCAGCA-CGGCCGGCaCCAcguaGAGCAu- -3' miRNA: 3'- cGUCGUuGUCGGCUG-GGUc---CUCGUuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 10998 | 0.69 | 0.406451 |
Target: 5'- aGCAGCAgguAgGGCCagaagcaGGCCCAGGcgAGCAGc -3' miRNA: 3'- -CGUCGU---UgUCGG-------CUGGGUCC--UCGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 32270 | 0.69 | 0.4074 |
Target: 5'- cGCAGCGACGGCuaCGGCCUGGcGAaacugGCGAa -3' miRNA: 3'- -CGUCGUUGUCG--GCUGGGUC-CU-----CGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 15532 | 0.69 | 0.416966 |
Target: 5'- cCAGCAGgGGCUGACgCCcuGAGCAu- -3' miRNA: 3'- cGUCGUUgUCGGCUG-GGucCUCGUuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 5085 | 0.68 | 0.425692 |
Target: 5'- uGCGGUuggaacaGGCGGCCGGCCCAgcguccGGuGCGGc -3' miRNA: 3'- -CGUCG-------UUGUCGGCUGGGU------CCuCGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 10247 | 0.68 | 0.426668 |
Target: 5'- gGCGGCGACcGCagCGACCUGGGcGGCGGu -3' miRNA: 3'- -CGUCGUUGuCG--GCUGGGUCC-UCGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 9408 | 0.68 | 0.456556 |
Target: 5'- cCAGCggUGGCCGugCCGaGGGCGc- -3' miRNA: 3'- cGUCGuuGUCGGCugGGUcCUCGUuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 27791 | 0.68 | 0.466767 |
Target: 5'- -aGGCAGC-GCCG-CCgAGGuGCAGGu -3' miRNA: 3'- cgUCGUUGuCGGCuGGgUCCuCGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 22381 | 0.69 | 0.388686 |
Target: 5'- -aGGcCAACAGCCGGCCgCGGGcGCu-- -3' miRNA: 3'- cgUC-GUUGUCGGCUGG-GUCCuCGuuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 41401 | 0.7 | 0.370545 |
Target: 5'- gGCGGUuauuccaacAACccGGCCGACCCcGGcGGCGAGa -3' miRNA: 3'- -CGUCG---------UUG--UCGGCUGGGuCC-UCGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 8981 | 0.7 | 0.370545 |
Target: 5'- cGCAGCggUGGCCGugCCGccAGCGGu -3' miRNA: 3'- -CGUCGuuGUCGGCugGGUccUCGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 37806 | 0.7 | 0.361694 |
Target: 5'- cGCAGCGcCAGCCGGCgugCUGGGcGCAGu -3' miRNA: 3'- -CGUCGUuGUCGGCUG---GGUCCuCGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 8674 | 0.71 | 0.28878 |
Target: 5'- uGCAGCGGCuGCUGcgccGCCCAGGuguGCGc- -3' miRNA: 3'- -CGUCGUUGuCGGC----UGGGUCCu--CGUuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 31440 | 0.72 | 0.274232 |
Target: 5'- cGCAcGCAacgugcGCAGgCGGCCCAGcAGCAGGc -3' miRNA: 3'- -CGU-CGU------UGUCgGCUGGGUCcUCGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 19597 | 0.72 | 0.253519 |
Target: 5'- cGCAGCAGCAgGCCGACCa---GGCGAa -3' miRNA: 3'- -CGUCGUUGU-CGGCUGGguccUCGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 14760 | 0.72 | 0.246906 |
Target: 5'- aGCAGCGgcGCGGCCGGCgCCAccGcGGGCAGc -3' miRNA: 3'- -CGUCGU--UGUCGGCUG-GGU--C-CUCGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 4047 | 0.73 | 0.209618 |
Target: 5'- cGCGGCgAGCGGCaggccagCGGCCCAGGGGgGAu -3' miRNA: 3'- -CGUCG-UUGUCG-------GCUGGGUCCUCgUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 18829 | 0.66 | 0.596712 |
Target: 5'- cGUAGCcGCGGCgcauCGGCCCGGuGGCGc- -3' miRNA: 3'- -CGUCGuUGUCG----GCUGGGUCcUCGUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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