miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26693 5' -56 NC_005808.1 + 13708 0.66 0.552193
Target:  5'- uCGGCGACGGCCagcaacuACgCCAGcAGCGAGg -3'
miRNA:   3'- cGUCGUUGUCGGc------UG-GGUCcUCGUUC- -5'
26693 5' -56 NC_005808.1 + 23111 0.66 0.552193
Target:  5'- --cGCAGCGGCCuGCCCAccggcaccuGGcGCAAGc -3'
miRNA:   3'- cguCGUUGUCGGcUGGGU---------CCuCGUUC- -5'
26693 5' -56 NC_005808.1 + 42071 0.66 0.563244
Target:  5'- cGCGGUGACGGCCGAacagaaCCGccuGCAAGc -3'
miRNA:   3'- -CGUCGUUGUCGGCUg-----GGUccuCGUUC- -5'
26693 5' -56 NC_005808.1 + 2660 0.66 0.578811
Target:  5'- -gGGcCAGCGGUCG-CCCAGGuguucgaucagccacGGCAGGu -3'
miRNA:   3'- cgUC-GUUGUCGGCuGGGUCC---------------UCGUUC- -5'
26693 5' -56 NC_005808.1 + 37979 0.66 0.584394
Target:  5'- gGCAGCGcgggccaacauugGCcuGGCUGACCUGGGcGGCAu- -3'
miRNA:   3'- -CGUCGU-------------UG--UCGGCUGGGUCC-UCGUuc -5'
26693 5' -56 NC_005808.1 + 16322 0.66 0.596712
Target:  5'- cGCGcGCGAUgcgcgAGCCGACC-AGGccGGCGGGu -3'
miRNA:   3'- -CGU-CGUUG-----UCGGCUGGgUCC--UCGUUC- -5'
26693 5' -56 NC_005808.1 + 18829 0.66 0.596712
Target:  5'- cGUAGCcGCGGCgcauCGGCCCGGuGGCGc- -3'
miRNA:   3'- -CGUCGuUGUCG----GCUGGGUCcUCGUuc -5'
26693 5' -56 NC_005808.1 + 14760 0.72 0.246906
Target:  5'- aGCAGCGgcGCGGCCGGCgCCAccGcGGGCAGc -3'
miRNA:   3'- -CGUCGU--UGUCGGCUG-GGU--C-CUCGUUc -5'
26693 5' -56 NC_005808.1 + 4047 0.73 0.209618
Target:  5'- cGCGGCgAGCGGCaggccagCGGCCCAGGGGgGAu -3'
miRNA:   3'- -CGUCG-UUGUCG-------GCUGGGUCCUCgUUc -5'
26693 5' -56 NC_005808.1 + 22347 1.11 0.000346
Target:  5'- aGCAGCAACAGCCGACCCAGGAGCAAGg -3'
miRNA:   3'- -CGUCGUUGUCGGCUGGGUCCUCGUUC- -5'
26693 5' -56 NC_005808.1 + 36217 0.71 0.28878
Target:  5'- cGCcGCGGCGGCCGACCU-GGuGUAAc -3'
miRNA:   3'- -CGuCGUUGUCGGCUGGGuCCuCGUUc -5'
26693 5' -56 NC_005808.1 + 16643 0.75 0.178274
Target:  5'- uGguGCAGguGCCGGCCgacgaGGGAGCGGa -3'
miRNA:   3'- -CguCGUUguCGGCUGGg----UCCUCGUUc -5'
26693 5' -56 NC_005808.1 + 12011 0.71 0.296279
Target:  5'- uCGGcCAGCAGCgCGGCCguGGccGGCGAGg -3'
miRNA:   3'- cGUC-GUUGUCG-GCUGGguCC--UCGUUC- -5'
26693 5' -56 NC_005808.1 + 28964 0.71 0.311728
Target:  5'- uGCAGCGACAuGCCGACuuucagCCAGGuGUc-- -3'
miRNA:   3'- -CGUCGUUGU-CGGCUG------GGUCCuCGuuc -5'
26693 5' -56 NC_005808.1 + 39672 0.69 0.379543
Target:  5'- cGCGGUGugGGCCGGCaUGGGAauggGCAAGa -3'
miRNA:   3'- -CGUCGUugUCGGCUGgGUCCU----CGUUC- -5'
26693 5' -56 NC_005808.1 + 37452 0.69 0.397972
Target:  5'- aGCAGCGACGGCCG-CCUGcGcGGCAc- -3'
miRNA:   3'- -CGUCGUUGUCGGCuGGGU-CcUCGUuc -5'
26693 5' -56 NC_005808.1 + 37644 0.69 0.397972
Target:  5'- aGCAGCGcgauacGCGGCUGcaucguggcGCCCGaGGGCAAGa -3'
miRNA:   3'- -CGUCGU------UGUCGGC---------UGGGUcCUCGUUC- -5'
26693 5' -56 NC_005808.1 + 18582 0.69 0.405503
Target:  5'- cGCGGUGACGGCCuGGCCguccgagacuuGGAGCAGu -3'
miRNA:   3'- -CGUCGUUGUCGG-CUGGgu---------CCUCGUUc -5'
26693 5' -56 NC_005808.1 + 32444 0.67 0.516235
Target:  5'- gGCAGCGACuGCCccuacGCCCccuacugccgagguGGGGGCGGc -3'
miRNA:   3'- -CGUCGUUGuCGGc----UGGG--------------UCCUCGUUc -5'
26693 5' -56 NC_005808.1 + 6591 0.67 0.519467
Target:  5'- cCAGCA-CGGCCGGCaCCAcguaGAGCAu- -3'
miRNA:   3'- cGUCGUuGUCGGCUG-GGUc---CUCGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.