Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26693 | 5' | -56 | NC_005808.1 | + | 689 | 0.66 | 0.574353 |
Target: 5'- gGCGGCGccgGCcgGGCCGcccaagauaccGCCCAGGAuaGGGg -3' miRNA: 3'- -CGUCGU---UG--UCGGC-----------UGGGUCCUcgUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 2660 | 0.66 | 0.578811 |
Target: 5'- -gGGcCAGCGGUCG-CCCAGGuguucgaucagccacGGCAGGu -3' miRNA: 3'- cgUC-GUUGUCGGCuGGGUCC---------------UCGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 4047 | 0.73 | 0.209618 |
Target: 5'- cGCGGCgAGCGGCaggccagCGGCCCAGGGGgGAu -3' miRNA: 3'- -CGUCG-UUGUCG-------GCUGGGUCCUCgUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 5085 | 0.68 | 0.425692 |
Target: 5'- uGCGGUuggaacaGGCGGCCGGCCCAgcguccGGuGCGGc -3' miRNA: 3'- -CGUCG-------UUGUCGGCUGGGU------CCuCGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 5948 | 0.66 | 0.563244 |
Target: 5'- aGC-GCAACGGuguaguCCGuACCCAGGGuCAAGg -3' miRNA: 3'- -CGuCGUUGUC------GGC-UGGGUCCUcGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 6591 | 0.67 | 0.519467 |
Target: 5'- cCAGCA-CGGCCGGCaCCAcguaGAGCAu- -3' miRNA: 3'- cGUCGUuGUCGGCUG-GGUc---CUCGUuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 6921 | 0.67 | 0.52921 |
Target: 5'- -aGGCAuuGCGGCCGACCCAuuccuucGuGGCAGa -3' miRNA: 3'- cgUCGU--UGUCGGCUGGGU-------CcUCGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 8234 | 0.66 | 0.585512 |
Target: 5'- gGCGGCcgucAGCAGCuugcgcuucaagCGGCCCAGGuGUucGa -3' miRNA: 3'- -CGUCG----UUGUCG------------GCUGGGUCCuCGuuC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 8674 | 0.71 | 0.28878 |
Target: 5'- uGCAGCGGCuGCUGcgccGCCCAGGuguGCGc- -3' miRNA: 3'- -CGUCGUUGuCGGC----UGGGUCCu--CGUuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 8981 | 0.7 | 0.370545 |
Target: 5'- cGCAGCggUGGCCGugCCGccAGCGGu -3' miRNA: 3'- -CGUCGuuGUCGGCugGGUccUCGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 9408 | 0.68 | 0.456556 |
Target: 5'- cCAGCggUGGCCGugCCGaGGGCGc- -3' miRNA: 3'- cGUCGuuGUCGGCugGGUcCUCGUuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 10247 | 0.68 | 0.426668 |
Target: 5'- gGCGGCGACcGCagCGACCUGGGcGGCGGu -3' miRNA: 3'- -CGUCGUUGuCG--GCUGGGUCC-UCGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 10956 | 0.67 | 0.530297 |
Target: 5'- cGCGGCGACAGCCGGggacaCUGGGccaccuguucGGCcAGg -3' miRNA: 3'- -CGUCGUUGUCGGCUg----GGUCC----------UCGuUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 10998 | 0.69 | 0.406451 |
Target: 5'- aGCAGCAgguAgGGCCagaagcaGGCCCAGGcgAGCAGc -3' miRNA: 3'- -CGUCGU---UgUCGG-------CUGGGUCC--UCGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 11077 | 0.68 | 0.477094 |
Target: 5'- aCGGCAacACAGCgaGGCCCAGcAGCAc- -3' miRNA: 3'- cGUCGU--UGUCGg-CUGGGUCcUCGUuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 11418 | 0.66 | 0.574353 |
Target: 5'- aGCAGCGGCgAGCCGGCgugCAGGucGCc-- -3' miRNA: 3'- -CGUCGUUG-UCGGCUGg--GUCCu-CGuuc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 12011 | 0.71 | 0.296279 |
Target: 5'- uCGGcCAGCAGCgCGGCCguGGccGGCGAGg -3' miRNA: 3'- cGUC-GUUGUCG-GCUGGguCC--UCGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 13708 | 0.66 | 0.552193 |
Target: 5'- uCGGCGACGGCCagcaacuACgCCAGcAGCGAGg -3' miRNA: 3'- cGUCGUUGUCGGc------UG-GGUCcUCGUUC- -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 14760 | 0.72 | 0.246906 |
Target: 5'- aGCAGCGgcGCGGCCGGCgCCAccGcGGGCAGc -3' miRNA: 3'- -CGUCGU--UGUCGGCUG-GGU--C-CUCGUUc -5' |
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26693 | 5' | -56 | NC_005808.1 | + | 15532 | 0.69 | 0.416966 |
Target: 5'- cCAGCAGgGGCUGACgCCcuGAGCAu- -3' miRNA: 3'- cGUCGUUgUCGGCUG-GGucCUCGUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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