Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26694 | 5' | -62.4 | NC_005808.1 | + | 5353 | 0.7 | 0.141132 |
Target: 5'- cGCgCUGCGugGCCGCCUGcaccGCGcccAGGGu -3' miRNA: 3'- cUG-GACGCugCGGCGGAC----CGC---UCCUu -5' |
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26694 | 5' | -62.4 | NC_005808.1 | + | 23934 | 0.71 | 0.110125 |
Target: 5'- aGGCgUGauggucaGGCGCCGCCcGGCGAGGu- -3' miRNA: 3'- -CUGgACg------CUGCGGCGGaCCGCUCCuu -5' |
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26694 | 5' | -62.4 | NC_005808.1 | + | 13483 | 0.72 | 0.104159 |
Target: 5'- uGACCUggGCGAUGCCGaCCgcgccuuugGGCGAGGu- -3' miRNA: 3'- -CUGGA--CGCUGCGGC-GGa--------CCGCUCCuu -5' |
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26694 | 5' | -62.4 | NC_005808.1 | + | 37728 | 0.72 | 0.101291 |
Target: 5'- --aUUGCGugGCuCGCC-GGCGAGGAu -3' miRNA: 3'- cugGACGCugCG-GCGGaCCGCUCCUu -5' |
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26694 | 5' | -62.4 | NC_005808.1 | + | 11693 | 0.74 | 0.068233 |
Target: 5'- aGACUgcgGCGGacuuaGCCGCUUGGCGAGGu- -3' miRNA: 3'- -CUGGa--CGCUg----CGGCGGACCGCUCCuu -5' |
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26694 | 5' | -62.4 | NC_005808.1 | + | 13908 | 0.74 | 0.070002 |
Target: 5'- cGACCUugugaacgacgugGCG-CGCCGCgCUGGCGAGGc- -3' miRNA: 3'- -CUGGA-------------CGCuGCGGCG-GACCGCUCCuu -5' |
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26694 | 5' | -62.4 | NC_005808.1 | + | 21990 | 0.98 | 0.000872 |
Target: 5'- cGACCUGCGACGCCGCCUGGCGaAGGAu -3' miRNA: 3'- -CUGGACGCUGCGGCGGACCGC-UCCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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