Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26695 | 3' | -51.8 | NC_005808.1 | + | 6635 | 0.66 | 0.870143 |
Target: 5'- aGCuucGCGCGCUUgGCCGGaGUGucCGCg -3' miRNA: 3'- -CGuuuUGCGCGAG-UGGCUgCACu-GCG- -5' |
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26695 | 3' | -51.8 | NC_005808.1 | + | 18867 | 0.66 | 0.870143 |
Target: 5'- cGCugcuGCGCGC-CACCGaggcacuggcccGCGaccugGGCGCu -3' miRNA: 3'- -CGuuu-UGCGCGaGUGGC------------UGCa----CUGCG- -5' |
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26695 | 3' | -51.8 | NC_005808.1 | + | 34406 | 0.66 | 0.870143 |
Target: 5'- gGCcguGCGCGaugaaaUCGCCGGCagcauccgGGCGCa -3' miRNA: 3'- -CGuuuUGCGCg-----AGUGGCUGca------CUGCG- -5' |
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26695 | 3' | -51.8 | NC_005808.1 | + | 18646 | 0.66 | 0.870143 |
Target: 5'- gGC-AAAUGCcgacCUCGCCGGgCGUG-CGCc -3' miRNA: 3'- -CGuUUUGCGc---GAGUGGCU-GCACuGCG- -5' |
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26695 | 3' | -51.8 | NC_005808.1 | + | 8118 | 0.66 | 0.870143 |
Target: 5'- uGCAc--CGCGCg-GCCGGCGUugguugugGGCGUg -3' miRNA: 3'- -CGUuuuGCGCGagUGGCUGCA--------CUGCG- -5' |
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26695 | 3' | -51.8 | NC_005808.1 | + | 31910 | 0.66 | 0.861835 |
Target: 5'- gGCcguGCGCGCU-GCCGuCaaGACGCa -3' miRNA: 3'- -CGuuuUGCGCGAgUGGCuGcaCUGCG- -5' |
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26695 | 3' | -51.8 | NC_005808.1 | + | 1651 | 0.66 | 0.861835 |
Target: 5'- gGUAGGucuGCGCGUccugUUugCG-CGUGAUGCu -3' miRNA: 3'- -CGUUU---UGCGCG----AGugGCuGCACUGCG- -5' |
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26695 | 3' | -51.8 | NC_005808.1 | + | 19178 | 0.66 | 0.861835 |
Target: 5'- cGCugccCGUGC-CGCCGGCGUcGAUGa -3' miRNA: 3'- -CGuuuuGCGCGaGUGGCUGCA-CUGCg -5' |
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26695 | 3' | -51.8 | NC_005808.1 | + | 37649 | 0.66 | 0.861835 |
Target: 5'- cGCGAuACGCGg-CugCauCGUGGCGCc -3' miRNA: 3'- -CGUUuUGCGCgaGugGcuGCACUGCG- -5' |
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26695 | 3' | -51.8 | NC_005808.1 | + | 40873 | 0.66 | 0.852403 |
Target: 5'- cGCGAggacuugGACGCcCUCGCCGGC---ACGCc -3' miRNA: 3'- -CGUU-------UUGCGcGAGUGGCUGcacUGCG- -5' |
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26695 | 3' | -51.8 | NC_005808.1 | + | 18695 | 0.66 | 0.844464 |
Target: 5'- gGCAugGaa-GC-CGCgGGCGUGGCGCa -3' miRNA: 3'- -CGUuuUgcgCGaGUGgCUGCACUGCG- -5' |
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26695 | 3' | -51.8 | NC_005808.1 | + | 32788 | 0.66 | 0.844464 |
Target: 5'- uGCGcAAACGCuGCUUGacugguUCGGCGUG-CGCg -3' miRNA: 3'- -CGU-UUUGCG-CGAGU------GGCUGCACuGCG- -5' |
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26695 | 3' | -51.8 | NC_005808.1 | + | 13922 | 0.66 | 0.844464 |
Target: 5'- aCGugGCGCGCcgCGCUGGCGaGGcCGCc -3' miRNA: 3'- cGUuuUGCGCGa-GUGGCUGCaCU-GCG- -5' |
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26695 | 3' | -51.8 | NC_005808.1 | + | 24915 | 0.66 | 0.844464 |
Target: 5'- cCGAGugGCGCuUCGCCuACGcccagcccgccGACGCa -3' miRNA: 3'- cGUUUugCGCG-AGUGGcUGCa----------CUGCG- -5' |
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26695 | 3' | -51.8 | NC_005808.1 | + | 38901 | 0.66 | 0.844464 |
Target: 5'- cGCAugGGGCaGCGCgUCGCCGG-GUGGauuCGCa -3' miRNA: 3'- -CGU--UUUG-CGCG-AGUGGCUgCACU---GCG- -5' |
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26695 | 3' | -51.8 | NC_005808.1 | + | 29422 | 0.66 | 0.844464 |
Target: 5'- cGCGuugcccACGCGCUCGC--ACGUcGCGCc -3' miRNA: 3'- -CGUuu----UGCGCGAGUGgcUGCAcUGCG- -5' |
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26695 | 3' | -51.8 | NC_005808.1 | + | 38658 | 0.66 | 0.844464 |
Target: 5'- aGCAAauacAACGUGaccaUCGCgGACGgcaGCGCg -3' miRNA: 3'- -CGUU----UUGCGCg---AGUGgCUGCac-UGCG- -5' |
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26695 | 3' | -51.8 | NC_005808.1 | + | 26408 | 0.66 | 0.844464 |
Target: 5'- gGCGAAugGCGCg---UGGCGUcggugaacuccGACGCg -3' miRNA: 3'- -CGUUUugCGCGagugGCUGCA-----------CUGCG- -5' |
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26695 | 3' | -51.8 | NC_005808.1 | + | 27824 | 0.66 | 0.835418 |
Target: 5'- cGC---GCGCGCU-GCCcGCGgUGGCGCc -3' miRNA: 3'- -CGuuuUGCGCGAgUGGcUGC-ACUGCG- -5' |
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26695 | 3' | -51.8 | NC_005808.1 | + | 34869 | 0.66 | 0.835418 |
Target: 5'- aGCAAGcCG-GC-CGCCGAgCGUG-CGCu -3' miRNA: 3'- -CGUUUuGCgCGaGUGGCU-GCACuGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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