miRNA display CGI


Results 41 - 52 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26698 3' -54.5 NC_005808.1 + 17748 0.66 0.67334
Target:  5'- uGGCGAAACCC-CAgGUgUGCaguucgagcaGCGAGUCg -3'
miRNA:   3'- -CUGCUUUGGGcGUgCG-ACG----------CGCUUAG- -5'
26698 3' -54.5 NC_005808.1 + 12384 0.66 0.67334
Target:  5'- cGGCGAGucgauGCCUGCGCGCuUGUauGCGGc-- -3'
miRNA:   3'- -CUGCUU-----UGGGCGUGCG-ACG--CGCUuag -5'
26698 3' -54.5 NC_005808.1 + 31906 0.66 0.67334
Target:  5'- -cCGAGGCCgUGCGCGCUGC-CG--UCa -3'
miRNA:   3'- cuGCUUUGG-GCGUGCGACGcGCuuAG- -5'
26698 3' -54.5 NC_005808.1 + 27835 0.66 0.67334
Target:  5'- --aGAucGACaCCGaCACGCUGCGCGc--- -3'
miRNA:   3'- cugCU--UUG-GGC-GUGCGACGCGCuuag -5'
26698 3' -54.5 NC_005808.1 + 24149 0.66 0.683447
Target:  5'- cGCGccuGGCCCaGCGCcucgacgGCUGCGCGcuUCg -3'
miRNA:   3'- cUGCu--UUGGG-CGUG-------CGACGCGCuuAG- -5'
26698 3' -54.5 NC_005808.1 + 12193 0.66 0.684568
Target:  5'- aACGAAACCgGCccGCGCUGCcuGCcccuGGUCg -3'
miRNA:   3'- cUGCUUUGGgCG--UGCGACG--CGc---UUAG- -5'
26698 3' -54.5 NC_005808.1 + 42362 0.66 0.684568
Target:  5'- cGGgGAAACCCaGCGCGCcaaugccgaggUGCGCcAGUUc -3'
miRNA:   3'- -CUgCUUUGGG-CGUGCG-----------ACGCGcUUAG- -5'
26698 3' -54.5 NC_005808.1 + 26599 0.66 0.684568
Target:  5'- cGGCGAccugucCCUGCGCGCgGCGCa---- -3'
miRNA:   3'- -CUGCUuu----GGGCGUGCGaCGCGcuuag -5'
26698 3' -54.5 NC_005808.1 + 32780 0.66 0.695743
Target:  5'- cGGCGAAguccGCCCucgGCACcucgcugguGCUGCGCGucugccGGUCg -3'
miRNA:   3'- -CUGCUU----UGGG---CGUG---------CGACGCGC------UUAG- -5'
26698 3' -54.5 NC_005808.1 + 30262 0.66 0.695743
Target:  5'- --aGAuAGCUgCGCugGUcGCGCGAGUCg -3'
miRNA:   3'- cugCU-UUGG-GCGugCGaCGCGCUUAG- -5'
26698 3' -54.5 NC_005808.1 + 12132 0.66 0.695743
Target:  5'- uGGCGcGACgCGCcacGCGCUGCGCu---- -3'
miRNA:   3'- -CUGCuUUGgGCG---UGCGACGCGcuuag -5'
26698 3' -54.5 NC_005808.1 + 13920 0.66 0.695743
Target:  5'- cGACGugGCgCGcCGCGCUG-GCGAGg- -3'
miRNA:   3'- -CUGCuuUGgGC-GUGCGACgCGCUUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.